Sequence Similarity Clusters for the Entities in PDB 5BPD

Entity #1 | Chains: A,B,C,D
TrmBL2 protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 4050
95 % 1 4 4996 Flexibility: High
Max RMSD: 20.7, Avg RMSD: 11.2
PDBFlex
90 % 1 4 5074
70 % 1 4 5006
50 % 1 4 4849
40 % 1 4 4717
30 % 1 4 4586
Entity #2 | Chains: E
DNA (5'-D(P*TP*AP*TP*AP*TP*CP*AP*TP*CP*GP*AP*TP*AP*GP*TP*GP*AP*TP*AP*TP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F
DNA (5'-D(P*TP*AP*TP*AP*TP*CP*AP*CP*TP*AP*TP*CP*GP*AP*TP*GP*AP*TP*AP*TP*A)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5BPD 1 A, B, C, D TrmBL2 2261
2 5BOX 1 A, B, C, D Putative HTH-type transcriptional regulator TrmBL2 2261
3 5BQT 1 A, B, C, D Putative HTH-type transcriptional regulator TrmBL2 2261
4 5BPI 1 A, B, C, D TrmBL2 2261