Sequence Similarity Clusters for the Entities in PDB 5B32

Entity #1 | Chains: A,E
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1078
95 % 36 232 63 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 36 240 62
70 % 36 243 70
50 % 36 252 91
40 % 36 252 107
30 % 36 252 110
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 235 40
95 % 38 257 38 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 38 266 38
70 % 38 265 46
50 % 38 265 83
40 % 38 265 99
30 % 38 265 99
Entity #3 | Chains: C
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 87 189
95 % 30 237 58 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 29 222 69
70 % 30 228 75
50 % 30 228 100
40 % 30 228 120
30 % 30 228 126
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 83 197
95 % 24 159 113 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 30 227 68
70 % 31 238 71
50 % 31 245 94
40 % 31 245 111
30 % 31 245 114
Entity #5 | Chains: G
Histone H2A.Z protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 11843
95 % 3 7 7196 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 7 7487
70 % 3 7 7059
50 % 4 16 2494
40 % 4 16 2520
30 % 4 16 2500
Entity #6 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WNN 1 A, C, E, G Histone H2A.1 4932
2 5B31 5 G Histone H2A.Z 9606
3 5Z30 3 C, G Histone H2A.Z 9606
4 5B32 5 G Histone H2A.Z 9606
5 1F66 4 C, G HISTONE H2A.Z 9606
6 5BT1 2 C Histone H2A.1 4932
7 5B33 3 C, G Histone H2A.Z 9606
8 2F8N 7 K Histone H2A type 1 10090
9 4KUD 3 C, G Histone H2A.2 4932
10 3WA9 3 C, G Histone H2A.Z 9606
11 1ID3 4 C, G HISTONE H2A.1 4932
12 3WAA 3 C, G Histone H2A.V 9606
13 4JJN 3 C, G Histone H2A.2 4932
14 6UPH 3 C, G Histone H2A 28985
15 6GEN 4 E, F Histone H2A.1 4932
16 6GEJ 4 E, F Histone H2A.1 4932