Sequence Similarity Clusters for the Entities in PDB 5B32

Entity #1 | Chains: A,E
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1068
95 % 36 230 62 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 36 238 64
70 % 36 241 70
50 % 36 250 91
40 % 36 250 107
30 % 36 250 109
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 233 40
95 % 38 255 39 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 38 264 39
70 % 38 263 49
50 % 38 263 84
40 % 38 263 101
30 % 38 263 103
Entity #3 | Chains: C
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 87 189
95 % 30 235 60 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 29 220 69
70 % 30 226 76
50 % 30 226 100
40 % 30 226 120
30 % 30 226 126
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 83 198
95 % 24 159 112 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 30 225 68
70 % 31 236 72
50 % 31 243 95
40 % 31 243 112
30 % 31 243 114
Entity #5 | Chains: G
Histone H2A.Z protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 11656
95 % 3 7 7087 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 7 7084
70 % 3 7 6966
50 % 4 16 2480
40 % 4 16 2504
30 % 4 16 2487
Entity #6 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 5X7X 2 B, F Histone H4 9606
21 5B31 2 B, F Histone H4 9606
22 5B1L 2 B, F Histone H4 10090
23 3UTB 2 B, F Histone H4 8355
24 1M19 3 B, F Histone H4 8355
25 5AVB 2 B, F Histone H4 9606
26 5AVC 2 B, F Histone H4 9606
27 5AV5 2 B, F Histone H4 9606
28 3C1B 2 B, F Histone H4 8355
29 5B1M 2 B, F Histone H4 10090
30 2NQB 3 B, F Histone H4 7227
31 5JA4 2 B Histone H4 9606
32 5OMX 4 B, F Histone H4 8355
33 6JR1 2 B, F Histone H4 9606
34 5F99 2 B, F Histone H4 8355
35 5Z30 2 B, F Histone H4 9606
36 5JRG 2 B, F Histone H4 9606
37 3UT9 2 B, F Histone H4 8355
38 5B32 2 B, F Histone H4 9606
39 3R45 2 B Histone H4 9606
40 4WU8 4 B, F Histone H4 8355
41 1P3I 3 B, F Histone H4 8355
42 3MGR 2 B, F Histone H4 8355
43 1F66 3 B, F HISTONE H4 10090
44 3AZG 2 B, F Histone H4 9606
45 1M18 3 B, F Histone H4 8355
46 5B2J 2 B, F Histone H4 9606
47 2PYO 4 B, F Histone H4 7227
48 1P3L 3 B, F Histone H4 8355
49 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
50 5B0Y 2 B, F Histone H4 9606
51 6JR0 2 B, F Histone H4 9606
52 2CV5 3 B, F Histone H4 9606
53 5CP6 4 B, F Histone H4 8355
54 5ZBX 2 B, F Histone H4 9606
55 5XF6 2 B, F Histone H4 8355
56 3MGP 2 B, F Histone H4 8355
57 3MVD 2 B, F Histone H4 8355
58 4J8U 2 B, F Histone H4 8355
59 4WU9 2 B, F Histone H4 8355
60 2YFW 2 B, D, F, H HISTONE H4 28985
61 3REH 2 B, F Histone H4 8355
62 3AZL 2 B, F Histone H4 9606
63 5Z23 2 B, F Histone H4 9606
64 3NQU 2 B Histone H4 9606
65 5BNV 2 B, E Histone H4 9606
66 3AFA 2 B, F Histone H4 9606
67 5E5A 3 B, F Histone H4 8355
68 3REJ 2 B, F Histone H4 8355
69 3AZF 2 B, F Histone H4 9606
70 5GTC 2 B, F Histone H4 9606
71 1P3P 3 B, F Histone H4 8355
72 3AV1 2 B, F Histone H4 9606
73 1M1A 3 B, F Histone H4 8355
74 5CPK 2 B, F Histone H4 9606
75 5AY8 2 B, F Histone H4 9606
76 3MNN 2 B, F Histone H4 8355
77 5BO0 2 B Histone H4 9606
78 1P3G 3 B, F Histone H4 8355
79 4J8W 2 B, F Histone H4 8355
80 1P34 3 B, F Histone H4 8355
81 5XF3 2 B, F Histone H4 9606
82 3X1V 3 B, F Histone H4 9606
83 5ONG 4 B, F Histone H4 8355
84 5ONW 4 B, F Histone H4 8355
85 5DNM 2 B, F Histone H4 8355
86 4HGA 3 C Histone H4 9606
87 4UUZ 2 B HISTONE H4 7227
88 3MGQ 2 B, F Histone H4 8355
89 3WTP 2 B, F Histone H4 9606
90 3X1T 3 B, F Histone H4 9606
91 2NZD 4 B, F Histone H4 8355
92 3A6N 2 B, F Histone H4 9606
93 5DNN 2 B, F Histone H4 8355
94 5GT3 2 B, F Histone H4 9606
95 5GT0 2 B, F Histone H4 9606
96 3LJA 2 B, F Histone H4 8355
97 3AZI 2 B, F Histone H4 9606
98 3TU4 2 B, F Histone H4 8355
99 1P3O 3 B, F Histone H4 8355
100 4Z2M 3 H, J Histone H4 9606
101 1KX4 3 B, F histone H4 8355
102 3AZN 2 B, F Histone H4 9606
103 1P3M 3 B, F Histone H4 8355
104 4J8V 2 B, F Histone H4 8355
105 5B33 2 B, F Histone H4 9606
106 3X1S 2 B, F Histone H4 9606
107 3LZ0 2 B, F Histone H4 8355
108 1P3F 3 B, F Histone H4 8355
109 1P3K 3 B, F Histone H4 8355
110 4XYI 2 B Histone H4 4897
111 5B2I 2 B, F Histone H4 9606
112 1P3A 3 B, F Histone H4 8355
113 3LZ1 2 B, F Histone H4 8355
114 2IO5 3 C Histone H4 8355
115 5GXQ 2 B, F Histone H4 9606
116 2F8N 3 B, F Histone H4 8355
117 4Z5T 2 B, F Histone H4 9606
118 1U35 3 B, F Hist1h4i protein 10090
119 5XM0 2 B, F Histone H4 10090
120 3AV2 2 B, F Histone H4 9606
121 3AYW 2 B, F Histone H4 9606
122 5XF5 2 B, F Histone H4 9606
123 3AZJ 2 B, F Histone H4 9606
124 3REK 2 B, F Histone H4 8355
125 4KGC 2 B, F Histone H4 8355
126 1ZLA 3 B, F Histone H4 8355
127 5GSU 2 B, F Histone H4 9606
128 5XF4 2 B, F Histone H4 9606
129 3REL 2 B, F Histone H4 8355
130 5GSE 2 B, F, L, P Histone H4 9606
131 3REI 2 B, F Histone H4 8355
132 1P3B 3 B, F Histone H4 8355
133 3WKJ 2 B, F Histone H4 9606
134 4KUD 2 B, F Histone H4 4932
135 3AZK 2 B, F Histone H4 9606
136 4J8X 2 B, F Histone H4 8355
137 3LEL 2 B, F, L, P Histone H4 8355
138 3KUY 2 B, F Histone H4 8355
139 4R8P 2 B, F Histone H4 8355
140 3AZM 2 B, F Histone H4 9606
141 3X1U 3 B, F Histone H4 9606
142 3MGS 2 B, F Histone H4 8355
143 3WA9 2 B, F Histone H4 9606
144 1ID3 3 B, F HISTONE H4 4932
145 3C1C 2 B, F Histone H4 8355
146 3AZH 2 B, F Histone H4 9606
147 5B40 2 B, F Histone H4 9606
148 3WAA 2 B, F Histone H4 9606
149 5CPI 2 B, F Histone H4 9606
150 4JJN 2 B, F Histone H4 4932
151 3W99 2 B, F Histone H4 UNP residues 17-103 9606
152 3AZE 2 B, F Histone H4 9606
153 3W96 2 B, F Histone H4 9606
154 6OM3 2 B, F, N, R Histone H4 8355
155 5XM1 2 B, F Histone H4 10090
156 5CPJ 2 B, F Histone H4 9606
157 5B24 2 B, F Histone H4 9606
158 5BS7 2 C, D Histone H4 8355
159 5C3I 3 C, G, K, O, S, W Histone H4 9606
160 2HIO 4 D PROTEIN (HISTONE H4) 9031
161 4QLC 4 B, F Histone H4 7227
162 4LD9 2 B, F Histone H4 8355
163 5ZBB 4 D Histone H4 4932
164 3O62 2 B, F Histone H4 8355
165 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
166 5KDM 2 B Histone H4 9606
167 3W97 2 B, F Histone H4 9606
168 4YM5 2 B, F Histone H4 9606
169 5ZBA 4 D Histone H4 4932
170 4YM6 2 B, F Histone H4 9606
171 2FJ7 4 B, F Histone H4 8355
172 3W98 2 B, F Histone H4 9606
173 4ZUX 2 B, F, L, P Histone H4 8355
174 3AN2 2 B, F Histone H4 9606
175 5BSA 2 C, D Histone H4 8355
176 3B6F 4 B, F Histone H4 8355
177 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
178 3B6G 4 B, F Histone H4 8355
179 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
180 3KXB 2 B, F Histone H4 8355
181 5HQ2 2 B Histone H4 8355
182 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
183 5OXV 4 B, F, L, P Histone H4 8355
184 1ZBB 4 B, F, b, f Histone H4 8355
185 6SEG 2 B, F Histone H4 9606
186 6SE0 2 B, F Histone H4 9606
187 6SE6 2 B, F Histone H4 9606
188 6SEE 2 B, F Histone H4 9606
189 6SEF 2 B, F Histone H4 9606
190 6PX1 2 B, F Histone H4 8355
191 6PX3 2 B, F Histone H4 8355
192 6PWE 2 B, F Histone H4 7227
193 6PWF 2 B, F Histone H4 7227
194 6KIU 2 B, F Histone H4 8355
195 6KIV 2 B, F Histone H4 8355
196 6KIW 2 B, F Histone H4 8355
197 6KIX 2 B, F Histone H4 8355
198 6KIZ 2 B, F Histone H4 8355
199 6K1P 2 B, F Histone H4 8355
200 6RNY 2 B, F Histone H4 9606
201 6JYL 2 B, F Histone H4 8355
202 6R8Y 2 B Histone H4 9606
203 6R8Y 5 F Histone H4 9606
204 6R8Z 2 B, F Histone H4 9606
205 6R90 2 B, F Histone H4 9606
206 6R91 2 B, F Histone H4 9606
207 6R92 5 B, F Histone H4 9606
208 6R93 4 B, F Histone H4 9606
209 6R94 4 B, F Histone H4 9606
210 6R1U 2 B, F Histone H4 8355
211 6R25 5 B, F H4 8355
212 6O96 2 B, F Histone H4 8355
213 6R0C 2 B, F Histone H4 9606
214 6O22 5 F Histone H4 8355
215 6O1D 2 B, F Histone H4 9606
216 6NZO 2 B, F Histone H4 8355
217 6J99 2 B, F Histone H4 8355
218 6NQA 3 B, F Histone H4 8355
219 6NOG 2 B, F Histone H4 8355
220 6NN6 2 B, F Histone H4 8355
221 6J4W 20 b, f Histone H4 9606
222 6J4X 20 b, f Histone H4 9606
223 6J4Y 20 b, f Histone H4 9606
224 6J4Z 19 b, f Histone H4 9606
225 6J50 19 b, f Histone H4 9606
226 6J51 20 b, f Histone H4 9606
227 6NJ9 1 B, F Histone H4 8355
228 6NE3 2 B, F Histone H4 8355
229 6I84 5 O, U Histone H4 8355
230 6IRO 3 B, F Histone H4 8355
231 6IR9 20 b, f Histone H4 9606
232 6INQ 17 b, f Histone H4 9606
233 6HTS 6 J, N Histone H4 9606
234 6E0C 2 B, F Histone H4 9606
235 6E0P 2 B, F Histone H4 9606
236 6DZT 2 B, F Histone H4 7227
237 6A5O 17 b, f Histone H4 9606
238 6A5P 17 b, f Histone H4 9606
239 6A5R 17 b, f Histone H4 9606
240 6A5T 17 b, f Histone H4 9606
241 6A5U 17 b, f Histone H4 9606
242 6A5L 17 b, f Histone H4 9606
243 6GEN 3 C, D Histone H4 4932
244 6GEJ 3 C, D Histone H4 4932
245 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
246 6FTX 2 B, F Histone H4 8355
247 6FML 10 N, R Histone H4 9606
248 5Z3L 2 B, F Histone H4 8355
249 5Z3O 2 B, F Histone H4 8355
250 5Z3T 3 B, F Histone H4 8355
251 5Z3U 3 B, F Histone H4 8355
252 5Z3V 3 B, F Histone H4 8355
253 6C0W 2 B, F Histone H4 9606
254 6BUZ 2 B, F Histone H4 9606
255 6ESF 2 B, F Histone H4 8355
256 6ESG 2 B, F Histone H4 8355
257 6ESH 2 B, F Histone H4 8355
258 6ESI 2 B, F Histone H4 8355
259 5O9G 2 B, F Histone H4 8355
260 5X0X 2 B, F Histone H4 8355
261 5X0Y 2 B, F Histone H4 8355
262 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
263 3C9K 4 D, H Histone H4 9031