Sequence Similarity Clusters for the Entities in PDB 5B32

Entity #1 | Chains: A,E
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1078
95 % 36 232 63 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 36 240 62
70 % 36 243 70
50 % 36 252 91
40 % 36 252 107
30 % 36 252 110
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 235 40
95 % 38 257 38 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 38 266 38
70 % 38 265 46
50 % 38 265 83
40 % 38 265 99
30 % 38 265 99
Entity #3 | Chains: C
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 87 189
95 % 30 237 58 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 29 222 69
70 % 30 228 75
50 % 30 228 100
40 % 30 228 120
30 % 30 228 126
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 83 197
95 % 24 159 113 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 30 227 68
70 % 31 238 71
50 % 31 245 94
40 % 31 245 111
30 % 31 245 114
Entity #5 | Chains: G
Histone H2A.Z protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 11843
95 % 3 7 7196 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 7 7487
70 % 3 7 7059
50 % 4 16 2494
40 % 4 16 2520
30 % 4 16 2500
Entity #6 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 3 C, G HISTONE H3 9031
2 4H9N 1 A Histone H3.3 9606
3 4H9Q 1 A Histone H3.3 9606
4 1KX5 3 A, E histone H3 8355
5 4H9O 1 A Histone H3.3 9606
6 2ARO 3 C, G HISTONE H3 9031
7 5B0Z 1 A, E Histone H3.2 9606
8 5Y0D 1 A, E Histone H3.1 9606
9 5Y0C 2 A, E Histone H3.1 9606
10 4H9R 1 A Histone H3.3 9606
11 1S32 2 A, E histone H3 8355
12 4H9P 1 A Histone H3.3 9606
13 5AV8 1 A, E Histone H3.1 9606
14 1KX3 2 A, E histone H3 8355
15 5AV9 1 A, E Histone H3.1 9606
16 5AV6 1 A, E Histone H3.1 9606
17 1HQ3 3 C, G HISTONE H3 9031
18 3UTA 1 A, E Histone H3.2 8355
19 5X7X 1 A, E Histone H3.3 9606
20 5B31 1 A, E Histone H3.1 9606
21 5B1L 1 A, E Histone H3t 10090
22 3UTB 1 A, E Histone H3.2 8355
23 1M19 2 A, E Histone H3.2 8355
24 5AVB 1 A, E Histone H3.1 9606
25 5AVC 1 A, E Histone H3.1 9606
26 5AV5 1 A, E Histone H3.1 9606
27 3C1B 1 A, E Histone H3-like 8355
28 5B1M 1 A, E Histone H3.1 10090
29 2NQB 2 A, E Histone H3 7227
30 5OMX 3 A, E Histone H3.2 8355
31 6JR1 1 A, E Histone H3.1 9606
32 5F99 1 A, E Histone H3.2 8355
33 5Z30 1 A, E Histone H3.1 9606
34 5JRG 1 A, E Histone H3.1 9606
35 3UT9 1 A, E Histone H3.2 8355
36 5B32 1 A, E Histone H3.3 9606
37 4WU8 3 A, E Histone H3.2 8355
38 1P3I 2 A, E Histone H3 8355
39 3MGR 1 A, E Histone H3.2 8355
40 1F66 2 A, E HISTONE H3 8355
41 3AZG 1 A, E Histone H3.1 9606
42 4H9S 1 A, B Histone H3.3 9606
43 1M18 2 A, E Histone H3.2 8355
44 5B2J 1 A, E Histone H3.1 9606
45 2PYO 3 A, E Histone H3 7227
46 1P3L 2 A, E Histone H3 8355
47 1EQZ 4 C, G PROTEIN (HISTONE H3) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
48 5B0Y 1 A, E Histone H3.2 9606
49 6JR0 1 A, E Histone H3.1 9606
50 2CV5 2 A, E Histone H3.1 9606
51 5CP6 3 A, E Histone H3.2 8355
52 5XF6 1 A, E Histone H3.2 8355
53 3MGP 1 A, E Histone H3.2 8355
54 3MVD 1 A, E Histone H3.2 8355
55 4J8U 1 A, E Histone H3.2 8355
56 4WU9 1 A, E Histone H3.2 8355
57 3REH 1 A, E Histone H3.2 8355
58 3AZL 1 A, E Histone H3.1 9606
59 3AFA 1 A, E Histone H3.1 9606
60 5E5A 2 A, E Histone H3.2 8355
61 3REJ 1 A, E Histone H3.2 8355
62 3AZF 1 A, E Histone H3.1 9606
63 5GTC 1 A, E Histone H3.1 9606
64 1P3P 2 A, E Histone H3 8355
65 3AV1 1 A, E Histone H3.2 9606
66 1M1A 2 A, E Histone H3.2 8355
67 5CPK 1 A, E Histone H3.1 9606
68 3MNN 1 A, E Histone H3.2 8355
69 1P3G 2 A, E Histone H3 8355
70 4J8W 1 A, E Histone H3.2 8355
71 1P34 2 A, E Histone H3 8355
72 5XF3 1 A, E Histone H3.1 9606
73 3X1V 2 A, E Histone H3.1 9606
74 5ONG 3 A, E Histone H3.2 8355
75 5ONW 3 A, E Histone H3.2 8355
76 5DNM 1 A, E Histone H3.2 8355
77 4HGA 2 B Histone H3.3 9606
78 4UUZ 1 A HISTONE H3 7227
79 3MGQ 1 A, E Histone H3.2 8355
80 3WTP 5 E Histone H3.3 9606
81 3X1T 2 A, E Histone H3.1 9606
82 2NZD 3 A, E Histone H3 8355
83 3A6N 1 A, E Histone H3.1t 9606
84 5DNN 1 A, E Histone H3.2 8355
85 5GT3 1 A, E Histone H3.1 9606
86 5GT0 1 A, E Histone H3.1 9606
87 3LJA 1 A, E Histone H3.2 8355
88 3AZI 1 A, E Histone H3.1 9606
89 3TU4 1 A, E Histone H3.2 8355
90 1P3O 2 A, E Histone H3 8355
91 1KX4 2 A, E histone H3 8355
92 3AZN 1 A, E Histone H3.1 9606
93 1P3M 2 A, E Histone H3 8355
94 4J8V 1 A, E Histone H3.2 8355
95 5B33 1 A, E Histone H3.3 9606
96 3X1S 1 A, E Histone H3.1 9606
97 3LZ0 1 A, E Histone H3.2 8355
98 1P3F 2 A, E Histone H3 8355
99 1P3K 2 A, E Histone H3 8355
100 5B2I 1 A, E Histone H3.1 9606
101 1P3A 2 A, E Histone H3 8355
102 3LZ1 1 A, E Histone H3.2 8355
103 2IO5 2 B Histone H3.1 8355
104 5GXQ 1 A, E Histone H3.6 9606
105 2F8N 2 A, E Histone H3.1 8355
106 1U35 2 A, E Histone H3.1 10090
107 5XM0 1 A, E Histone H3.3 10090
108 3AV2 1 A, E Histone H3.3 9606
109 3AYW 1 A, E Histone H3.1 9606
110 5XF5 1 A, E Histone H3.1 9606
111 3AZJ 1 A, E Histone H3.1 9606
112 3REK 1 A, E Histone H3.2 8355
113 4KGC 1 A, E Histone H3.2 8355
114 1ZLA 2 A, E histone H3 8355
115 5GSU 1 A, E Histone H3.1 9606
116 5XF4 1 A, E Histone H3.1 9606
117 3REL 1 A, E Histone H3.2 8355
118 5GSE 1 A, E, K, O Histone H3.1 9606
119 3REI 1 A, E Histone H3.2 8355
120 1P3B 2 A, E Histone H3 8355
121 3WKJ 1 A, E Histone H3.1 9606
122 3AZK 1 A, E Histone H3.1 9606
123 4J8X 1 A, E Histone H3.2 8355
124 3LEL 1 A, E, K, O Histone H3.2 8355
125 3KUY 1 A, E Histone H3.2 8355
126 4R8P 1 A, E Histone H3.2 8355
127 3AZM 1 A, E Histone H3.1 9606
128 3X1U 2 A, E Histone H3.1 9606
129 3MGS 1 A, E Histone H3.2 8355
130 3WA9 1 A, E Histone H3.1 9606
131 3C1C 1 A, E Histone H3-like 8355
132 3AZH 1 A, E Histone H3.1 9606
133 5B40 1 A, E Histone H3.2 9606
134 3WAA 1 A, E Histone H3.1 9606
135 5CPI 1 A, E Histone H3.1 9606
136 3W99 1 A, E Histone H3.1 9606
137 3AZE 1 A, E Histone H3.1 9606
138 3W96 1 A, E Histone H3.1 9606
139 6OM3 1 A, E, M, Q Histone H3.2 8355
140 5XM1 1 A, E Histone H3mm7 10090
141 5CPJ 1 A, E Histone H3.1 9606
142 5B24 1 A, E Histone H3.1 9606
143 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
144 2HIO 3 C PROTEIN (HISTONE H3) 9031
145 4QLC 3 A, E Histone H3 7227
146 4LD9 1 A, E Histone H3.2 8355
147 3O62 1 A, E Histone H3.2 8355
148 4XUJ 1 A, E Histone H3.2 UNP residues 2-136 8355
149 5KDM 1 A Histone H3.3 9606
150 3W97 1 A, E Histone H3.1 9606
151 4YM5 1 A, E Histone H3.1 9606
152 4YM6 1 A, E Histone H3.1 9606
153 2FJ7 3 A, E histone H3 8355
154 4ZUX 1 A, E, K, O Histone H3.2 8355
155 3B6F 3 A, E Histone H3.2 8355
156 5OY7 2 A, E, I, M, Q, U, Y, c Histone H3 8355
157 3B6G 3 A, E Histone H3.2 8355
158 5NL0 1 A, E, K Histone H3.2 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
159 3KXB 1 A, E Histone H3.2 8355
160 5HQ2 1 A Histone H3.2 8355
161 6HKT 1 A, E, K, O, U, Y, a, e, k, o, u, y Histone H3.1 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
162 5OXV 5 A, E, K, O Histone H3.2 8355
163 1ZBB 3 A, E, a, e HISTONE H3 8355
164 6KW4 1 N, Q Histone H3.2 8355
165 6KW3 2 N, Q Histone H3.2 8355
166 6PX1 1 A, E Histone H3 8355
167 6PX3 1 A, E Histone H3 8355
168 6PWE 1 A, E Histone H3 7227
169 6PWF 1 A, E Histone H3 7227
170 6KIU 1 A, E Histone H3 8355
171 6KIV 1 A, E Histone H3 8355
172 6KIW 1 A, E Histone H3 8355
173 6KIX 1 A, E Histone H3 8355
174 6KIZ 1 A, E Histone H3 8355
175 6K1P 1 A, E Histone H3 8355
176 6RNY 1 A, E Histone H3.3 9606
177 6JYL 1 A, E Histone H3 8355
178 6R8Y 1 A, E Histone H3.1 9606
179 6R8Z 1 A, E Histone H3.1 9606
180 6R90 1 A, E Histone H3.1 9606
181 6R91 1 A, E Histone H3.1 9606
182 6R92 4 A, E Histone H3.1 9606
183 6R93 3 A, E Histone H3.1 9606
184 6R94 3 A, E Histone H3.1 9606
185 6R1U 1 A, E Histone H3.2 8355
186 6R1U 9 M Histone H3 8355
187 6R25 3 M Histone H3 8355
188 6R25 4 A, E Histone H3 8355
189 6O96 1 A, E Histone H3.2 8355
190 6R0C 1 A, E Histone H3.3 9606
191 6O22 4 E Histone H3.2 8355
192 6NZO 1 A, E Histone H3 8355
193 6J99 1 A, E Histone H3 8355
194 6NQA 8 A, E Histone H3.2 8355
195 6NOG 1 A, E Histone H3.2 8355
196 6NN6 1 A, E Histone H3.2 8355
197 6J4W 19 a, e Histone H3.3 9606
198 6J4X 19 a, e Histone H3.3 9606
199 6J4Y 19 a, e Histone H3.3 9606
200 6J4Z 18 a, e Histone H3.3 9606
201 6J50 18 a, e Histone H3.3 9606
202 6J51 19 a, e Histone H3.3 9606
203 6NJ9 6 A, E Histone H3.2 8355
204 6NE3 1 A, E Histone H3.2 8355
205 6I84 1 M, S Histone H3.2 8355
206 6IRO 2 A, E Histone H3 8355
207 6IR9 19 a, e Histone H3.3 9606
208 6INQ 16 a, e Histone H3.3 9606
209 6HTS 5 I, M Histone H3.1 9606
210 6DZT 1 A, E Histone H3 7227
211 6A5O 16 a, e Histone H3.3 9606
212 6A5P 16 a, e Histone H3.3 9606
213 6A5R 16 a, e Histone H3.3 9606
214 6A5T 16 a, e Histone H3.3 9606
215 6A5U 16 a, e Histone H3.3 9606
216 6A5L 16 a, e Histone H3.3 9606
217 6G0L 1 A, E Histone H3 Histone H3 sequence from X. Laevis. The N-terminal region from 1-39 is not resolved. 8355
218 6FML 9 M, Q Histone H3.2 9606
219 5Z3L 1 A, E Histone H3.2 8355
220 5Z3O 1 A, E Histone H3.2 8355
221 5Z3T 2 A, E Histone H3.2 8355
222 5Z3U 2 A, E Histone H3.2 8355
223 5Z3V 2 A, E Histone H3.2 8355
224 6ESF 1 A, E Histone H3.2 8355
225 6ESG 1 A, E Histone H3.2 8355
226 6ESH 1 A, E Histone H3.2 8355
227 6ESI 1 A, E Histone H3.2 8355
228 5O9G 1 A, E Histone H3.2 8355
229 5X0X 1 A, E Histone H3.2 8355
230 5X0Y 1 A, E Histone H3.2 8355
231 5KGF 1 A, E Histone H3.2 8355
232 3C9K 3 C, G Histone H3.2 9031