Sequence Similarity Clusters for the Entities in PDB 5B32

Entity #1 | Chains: A,E
Histone H3.3 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 24 1078
95 % 36 232 63 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 36 240 62
70 % 36 243 70
50 % 36 252 91
40 % 36 252 107
30 % 36 252 110
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 235 40
95 % 38 257 38 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 38 266 38
70 % 38 265 46
50 % 38 265 83
40 % 38 265 99
30 % 38 265 99
Entity #3 | Chains: C
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 87 189
95 % 30 237 58 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 29 222 69
70 % 30 228 75
50 % 30 228 100
40 % 30 228 120
30 % 30 228 126
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 83 197
95 % 24 159 113 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 30 227 68
70 % 31 238 71
50 % 31 245 94
40 % 31 245 111
30 % 31 245 114
Entity #5 | Chains: G
Histone H2A.Z protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 11843
95 % 3 7 7196 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 7 7487
70 % 3 7 7059
50 % 4 16 2494
40 % 4 16 2520
30 % 4 16 2500
Entity #6 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 3 C, G HISTONE H3 9031
2 4H9N 1 A Histone H3.3 9606
3 4H9Q 1 A Histone H3.3 9606
4 1KX5 3 A, E histone H3 8355
5 4H9O 1 A Histone H3.3 9606
6 2ARO 3 C, G HISTONE H3 9031
7 5B0Z 1 A, E Histone H3.2 9606
8 5Y0D 1 A, E Histone H3.1 9606
9 5Y0C 2 A, E Histone H3.1 9606
10 4H9R 1 A Histone H3.3 9606
11 1S32 2 A, E histone H3 8355
12 4H9P 1 A Histone H3.3 9606
13 5AV8 1 A, E Histone H3.1 9606
14 1KX3 2 A, E histone H3 8355
15 5AV9 1 A, E Histone H3.1 9606
16 5AV6 1 A, E Histone H3.1 9606
17 1HQ3 3 C, G HISTONE H3 9031
18 3UTA 1 A, E Histone H3.2 8355
19 5X7X 1 A, E Histone H3.3 9606
20 5B31 1 A, E Histone H3.1 9606
21 5B1L 1 A, E Histone H3t 10090
22 3UTB 1 A, E Histone H3.2 8355
23 1M19 2 A, E Histone H3.2 8355
24 5AVB 1 A, E Histone H3.1 9606
25 5AVC 1 A, E Histone H3.1 9606
26 5AV5 1 A, E Histone H3.1 9606
27 3C1B 1 A, E Histone H3-like 8355
28 5B1M 1 A, E Histone H3.1 10090
29 2NQB 2 A, E Histone H3 7227
30 5OMX 3 A, E Histone H3.2 8355
31 6JR1 1 A, E Histone H3.1 9606
32 5F99 1 A, E Histone H3.2 8355
33 5Z30 1 A, E Histone H3.1 9606
34 5JRG 1 A, E Histone H3.1 9606
35 3UT9 1 A, E Histone H3.2 8355
36 5B32 1 A, E Histone H3.3 9606
37 4WU8 3 A, E Histone H3.2 8355
38 1P3I 2 A, E Histone H3 8355
39 3MGR 1 A, E Histone H3.2 8355
40 1F66 2 A, E HISTONE H3 8355
41 3AZG 1 A, E Histone H3.1 9606
42 4H9S 1 A, B Histone H3.3 9606
43 1M18 2 A, E Histone H3.2 8355
44 5B2J 1 A, E Histone H3.1 9606
45 2PYO 3 A, E Histone H3 7227
46 1P3L 2 A, E Histone H3 8355
47 1EQZ 4 C, G PROTEIN (HISTONE H3) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
48 5B0Y 1 A, E Histone H3.2 9606
49 6JR0 1 A, E Histone H3.1 9606
50 2CV5 2 A, E Histone H3.1 9606
51 5CP6 3 A, E Histone H3.2 8355
52 5ZBX 1 A, E Histone H3.1,Histone H3-like centromeric protein A,Histone H3.1 Chimera protein H3CATD, in which amino acid residues 76-113 of human histone H3.1 were replaced by the corresponding amino acid residues 75-114 of human CENP-A. 9606
53 5XF6 1 A, E Histone H3.2 8355
54 3MGP 1 A, E Histone H3.2 8355
55 3MVD 1 A, E Histone H3.2 8355
56 4J8U 1 A, E Histone H3.2 8355
57 4WU9 1 A, E Histone H3.2 8355
58 3REH 1 A, E Histone H3.2 8355
59 3AZL 1 A, E Histone H3.1 9606
60 5Z23 1 A, E Histone H3.1,Histone H3-like centromeric protein A,Histone H3.1 Chimera protein H3CATD, in which amino acid residues 76-113 of human histone H3.1 were replaced by corresponding amino acid residues 75-114 of human CENP-A. 9606
61 3NQU 1 A Histone H3-like centromeric protein A 9606
62 3AFA 1 A, E Histone H3.1 9606
63 5E5A 2 A, E Histone H3.2 8355
64 3REJ 1 A, E Histone H3.2 8355
65 3AZF 1 A, E Histone H3.1 9606
66 5GTC 1 A, E Histone H3.1 9606
67 1P3P 2 A, E Histone H3 8355
68 3AV1 1 A, E Histone H3.2 9606
69 1M1A 2 A, E Histone H3.2 8355
70 5CPK 1 A, E Histone H3.1 9606
71 5AY8 1 A, E H3.Y 9606
72 3MNN 1 A, E Histone H3.2 8355
73 1P3G 2 A, E Histone H3 8355
74 4J8W 1 A, E Histone H3.2 8355
75 1P34 2 A, E Histone H3 8355
76 5XF3 1 A, E Histone H3.1 9606
77 3X1V 2 A, E Histone H3.1 9606
78 5ONG 3 A, E Histone H3.2 8355
79 5ONW 3 A, E Histone H3.2 8355
80 5DNM 1 A, E Histone H3.2 8355
81 4HGA 2 B Histone H3.3 9606
82 4UUZ 1 A HISTONE H3 7227
83 3MGQ 1 A, E Histone H3.2 8355
84 3WTP 1 A Histone H3-like centromeric protein A 9606
85 3WTP 5 E Histone H3.3 9606
86 3X1T 2 A, E Histone H3.1 9606
87 2NZD 3 A, E Histone H3 8355
88 3A6N 1 A, E Histone H3.1t 9606
89 5DNN 1 A, E Histone H3.2 8355
90 5GT3 1 A, E Histone H3.1 9606
91 5GT0 1 A, E Histone H3.1 9606
92 3LJA 1 A, E Histone H3.2 8355
93 3AZI 1 A, E Histone H3.1 9606
94 3TU4 1 A, E Histone H3.2 8355
95 1P3O 2 A, E Histone H3 8355
96 1KX4 2 A, E histone H3 8355
97 3AZN 1 A, E Histone H3.1 9606
98 1P3M 2 A, E Histone H3 8355
99 4J8V 1 A, E Histone H3.2 8355
100 5B33 1 A, E Histone H3.3 9606
101 3X1S 1 A, E Histone H3.1 9606
102 3LZ0 1 A, E Histone H3.2 8355
103 1P3F 2 A, E Histone H3 8355
104 1P3K 2 A, E Histone H3 8355
105 5B2I 1 A, E Histone H3.1 9606
106 1P3A 2 A, E Histone H3 8355
107 3LZ1 1 A, E Histone H3.2 8355
108 2IO5 2 B Histone H3.1 8355
109 5GXQ 1 A, E Histone H3.6 9606
110 2F8N 2 A, E Histone H3.1 8355
111 4Z5T 1 A, E Histone H3.3C 9606
112 1U35 2 A, E Histone H3.1 10090
113 5XM0 1 A, E Histone H3.3 10090
114 3AV2 1 A, E Histone H3.3 9606
115 3AYW 1 A, E Histone H3.1 9606
116 5XF5 1 A, E Histone H3.1 9606
117 3AZJ 1 A, E Histone H3.1 9606
118 3REK 1 A, E Histone H3.2 8355
119 4KGC 1 A, E Histone H3.2 8355
120 1ZLA 2 A, E histone H3 8355
121 5GSU 1 A, E Histone H3.1 9606
122 5XF4 1 A, E Histone H3.1 9606
123 3REL 1 A, E Histone H3.2 8355
124 5GSE 1 A, E, K, O Histone H3.1 9606
125 3REI 1 A, E Histone H3.2 8355
126 1P3B 2 A, E Histone H3 8355
127 3WKJ 1 A, E Histone H3.1 9606
128 4KUD 1 A, E Histone H3 4932
129 3AZK 1 A, E Histone H3.1 9606
130 4J8X 1 A, E Histone H3.2 8355
131 3LEL 1 A, E, K, O Histone H3.2 8355
132 3KUY 1 A, E Histone H3.2 8355
133 4R8P 1 A, E Histone H3.2 8355
134 3AZM 1 A, E Histone H3.1 9606
135 3X1U 2 A, E Histone H3.1 9606
136 3MGS 1 A, E Histone H3.2 8355
137 3WA9 1 A, E Histone H3.1 9606
138 1ID3 2 A, E HISTONE H3 4932
139 3C1C 1 A, E Histone H3-like 8355
140 3AZH 1 A, E Histone H3.1 9606
141 5B40 1 A, E Histone H3.2 9606
142 3WAA 1 A, E Histone H3.1 9606
143 5CPI 1 A, E Histone H3.1 9606
144 4JJN 1 A, E Histone H3 4932
145 3W99 1 A, E Histone H3.1 9606
146 3AZE 1 A, E Histone H3.1 9606
147 3W96 1 A, E Histone H3.1 9606
148 6OM3 1 A, E, M, Q Histone H3.2 8355
149 5XM1 1 A, E Histone H3mm7 10090
150 5CPJ 1 A, E Histone H3.1 9606
151 5B24 1 A, E Histone H3.1 9606
152 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
153 2HIO 3 C PROTEIN (HISTONE H3) 9031
154 4QLC 3 A, E Histone H3 7227
155 4LD9 1 A, E Histone H3.2 8355
156 5ZBB 3 C Histone H3 4932
157 3O62 1 A, E Histone H3.2 8355
158 4XUJ 1 A, E Histone H3.2 UNP residues 2-136 8355
159 5KDM 1 A Histone H3.3 9606
160 3W97 1 A, E Histone H3.1 9606
161 4YM5 1 A, E Histone H3.1 9606
162 5ZBA 3 C Histone H3 4932
163 4YM6 1 A, E Histone H3.1 9606
164 2FJ7 3 A, E histone H3 8355
165 4ZUX 1 A, E, K, O Histone H3.2 8355
166 3AN2 1 A, E Histone H3-like centromeric protein A 9606
167 3B6F 3 A, E Histone H3.2 8355
168 5OY7 2 A, E, I, M, Q, U, Y, c Histone H3 8355
169 3B6G 3 A, E Histone H3.2 8355
170 5NL0 1 A, E, K Histone H3.2 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
171 3KXB 1 A, E Histone H3.2 8355
172 5HQ2 1 A Histone H3.2 8355
173 6HKT 1 A, E, K, O, U, Y, a, e, k, o, u, y Histone H3.1 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
174 5OXV 5 A, E, K, O Histone H3.2 8355
175 1ZBB 3 A, E, a, e HISTONE H3 8355
176 6KW4 1 N, Q Histone H3.2 8355
177 6KW3 2 N, Q Histone H3.2 8355
178 6SEG 1 A, E Histone H3-like centromeric protein A 9606
179 6SE0 1 A, E Histone H3-like centromeric protein A 9606
180 6SE6 1 A, E Histone H3-like centromeric protein A 9606
181 6SEE 1 A, E Histone H3-like centromeric protein A 9606
182 6SEF 1 A, E Histone H3-like centromeric protein A 9606
183 6PX1 1 A, E Histone H3 8355
184 6PX3 1 A, E Histone H3 8355
185 6PWE 1 A, E Histone H3 7227
186 6PWF 1 A, E Histone H3 7227
187 6KIU 1 A, E Histone H3 8355
188 6KIV 1 A, E Histone H3 8355
189 6KIW 1 A, E Histone H3 8355
190 6KIX 1 A, E Histone H3 8355
191 6KIZ 1 A, E Histone H3 8355
192 6K1P 1 A, E Histone H3 8355
193 6RNY 1 A, E Histone H3.3 9606
194 6JYL 1 A, E Histone H3 8355
195 6R8Y 1 A, E Histone H3.1 9606
196 6R8Z 1 A, E Histone H3.1 9606
197 6R90 1 A, E Histone H3.1 9606
198 6R91 1 A, E Histone H3.1 9606
199 6R92 4 A, E Histone H3.1 9606
200 6R93 3 A, E Histone H3.1 9606
201 6R94 3 A, E Histone H3.1 9606
202 6R1U 1 A, E Histone H3.2 8355
203 6R1U 9 M Histone H3 8355
204 6R25 3 M Histone H3 8355
205 6R25 4 A, E Histone H3 8355
206 6O96 1 A, E Histone H3.2 8355
207 6R0C 1 A, E Histone H3.3 9606
208 6O22 4 E Histone H3.2 8355
209 6NZO 1 A, E Histone H3 8355
210 6J99 1 A, E Histone H3 8355
211 6NQA 8 A, E Histone H3.2 8355
212 6NOG 1 A, E Histone H3.2 8355
213 6NN6 1 A, E Histone H3.2 8355
214 6J4W 19 a, e Histone H3.3 9606
215 6J4X 19 a, e Histone H3.3 9606
216 6J4Y 19 a, e Histone H3.3 9606
217 6J4Z 18 a, e Histone H3.3 9606
218 6J50 18 a, e Histone H3.3 9606
219 6J51 19 a, e Histone H3.3 9606
220 6NJ9 6 A, E Histone H3.2 8355
221 6NE3 1 A, E Histone H3.2 8355
222 6I84 1 M, S Histone H3.2 8355
223 6IRO 2 A, E Histone H3 8355
224 6IR9 19 a, e Histone H3.3 9606
225 6INQ 16 a, e Histone H3.3 9606
226 6HTS 5 I, M Histone H3.1 9606
227 6DZT 1 A, E Histone H3 7227
228 6A5O 16 a, e Histone H3.3 9606
229 6A5P 16 a, e Histone H3.3 9606
230 6A5R 16 a, e Histone H3.3 9606
231 6A5T 16 a, e Histone H3.3 9606
232 6A5U 16 a, e Histone H3.3 9606
233 6A5L 16 a, e Histone H3.3 9606
234 6GEN 2 A, B Histone H3 4932
235 6GEJ 2 A, B Histone H3 4932
236 6G0L 1 A, E Histone H3 Histone H3 sequence from X. Laevis. The N-terminal region from 1-39 is not resolved. 8355
237 6FML 9 M, Q Histone H3.2 9606
238 5Z3L 1 A, E Histone H3.2 8355
239 5Z3O 1 A, E Histone H3.2 8355
240 5Z3T 2 A, E Histone H3.2 8355
241 5Z3U 2 A, E Histone H3.2 8355
242 5Z3V 2 A, E Histone H3.2 8355
243 6C0W 1 A, E Histone H3-like centromeric protein A 9606
244 6ESF 1 A, E Histone H3.2 8355
245 6ESG 1 A, E Histone H3.2 8355
246 6ESH 1 A, E Histone H3.2 8355
247 6ESI 1 A, E Histone H3.2 8355
248 5O9G 1 A, E Histone H3.2 8355
249 5X0X 1 A, E Histone H3.2 8355
250 5X0Y 1 A, E Histone H3.2 8355
251 5KGF 1 A, E Histone H3.2 8355
252 3C9K 3 C, G Histone H3.2 9031