Sequence Similarity Clusters for the Entities in PDB 5B0Y

Entity #1 | Chains: A,E
Histone H3.2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40805
95 % 48 238 59 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.1
PDBFlex
90 % 48 246 53
70 % 48 249 59
50 % 48 259 87
40 % 48 259 101
30 % 48 259 100
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 241 37
95 % 50 263 34 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 50 272 37
70 % 50 271 46
50 % 50 271 82
40 % 50 271 96
30 % 50 271 93
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 89 180
95 % 39 243 46 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 38 226 69
70 % 40 232 77
50 % 40 232 100
40 % 40 232 116
30 % 40 232 120
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 85 191
95 % 34 166 110 Flexibility: No
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 40 235 66
70 % 42 246 65
50 % 42 253 92
40 % 42 253 105
30 % 42 253 106
Entity #5 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures