Sequence Similarity Clusters for the Entities in PDB 5AY8

Entity #1 | Chains: A,E
H3.Y protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40015
95 % 1 1 34244 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 32827
70 % 72 259 52
50 % 73 269 81
40 % 73 269 99
30 % 73 269 98
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 70 251 24
95 % 76 273 33 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.1
PDBFlex
90 % 77 282 36
70 % 77 281 46
50 % 77 281 78
40 % 77 281 96
30 % 77 281 94
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 90 179
95 % 66 253 37 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 62 236 65
70 % 66 251 58
50 % 70 258 88
40 % 70 258 104
30 % 70 258 104
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 89 181
95 % 54 171 103 Flexibility: No
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 65 245 63
70 % 67 256 54
50 % 67 256 90
40 % 67 256 106
30 % 67 256 107
Entity #5 | Chains: I,J
DNA (146-MER) dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures