Sequence Similarity Clusters for the Entities in PDB 5AVI

Entity #1 | Chains: A,C
Oxysterols receptor LXR-alpha protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7387
95 % 9 10 3830 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 9 10 3916
70 % 20 22 1263
50 % 20 22 1305
40 % 21 24 1231
30 % 23 29 1153
Entity #2 | Chains: B,D
Nuclear receptor coactivator 1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 19 1293
95 % 19 19 1724
90 % 19 19 1764
70 % 19 19 1797
50 % 19 19 1843
40 % 19 19 1888
30 % 19 19 1921

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures