Sequence Similarity Clusters for the Entities in PDB 5AK8

Entity #1 | Chains: A
PEPTIDYLARGININE DEIMINASE protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41705
95 % 3 6 12535 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 6 12394
70 % 3 6 11501
50 % 3 6 10522
40 % 3 6 9901
30 % 3 6 9155

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures