Sequence Similarity Clusters for the Entities in PDB 5A9Q

Entity #1 | Chains: 0,9,I,R
NUCLEOPORIN NUP43 protein, length: 380 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 13043
95 % 2 2 12910
90 % 2 2 12749
70 % 2 2 12460
50 % 2 2 11133
40 % 2 2 10467
30 % 2 2 11072
Entity #10 | Chains: A,B
NUCLEAR PORE COMPLEX PROTEIN NUP155 protein, length: 1391 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 5025
95 % 3 3 5708
90 % 3 3 5740
70 % 3 3 5619
50 % 3 3 5468
40 % 3 3 5327
30 % 3 3 5039
Entity #2 | Chains: 1,J,S,a
NUCLEAR PORE COMPLEX PROTEIN NUP160 protein, length: 1436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19598
95 % 1 1 18810
90 % 1 1 22933
70 % 1 1 17157
50 % 1 1 14905
40 % 1 1 14225
30 % 1 1 12906
Entity #3 | Chains: 2,K,T,b
NUCLEOPORIN NUP37 protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25231
95 % 1 1 24168
90 % 1 1 23441
70 % 1 1 16577
50 % 1 1 15357
40 % 1 1 14224
30 % 1 1 12564
Entity #4 | Chains: 3,C,L,U
NUCLEAR PORE COMPLEX PROTEIN NUP133 protein, length: 1156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21315
95 % 1 1 18813
90 % 1 1 23491
70 % 1 1 17160
50 % 1 1 15360
40 % 1 1 14228
30 % 1 1 12909
Entity #5 | Chains: 4,D,M,V
NUCLEAR PORE COMPLEX PROTEIN NUP107 protein, length: 925 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20583
95 % 1 1 18812
90 % 1 1 18458
70 % 1 1 17159
50 % 1 1 15359
40 % 1 1 14227
30 % 1 1 12908
Entity #6 | Chains: 5,E,N,W
NUCLEAR PORE COMPLEX PROTEIN NUP96 protein, length: 937 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20582
95 % 1 1 18811
90 % 1 1 18457
70 % 1 1 17158
50 % 1 1 15358
40 % 1 1 14226
30 % 1 1 12907
Entity #7 | Chains: 6,F,O,X
PROTEIN SEC13 HOMOLOG protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 6498
95 % 3 3 6727
90 % 3 3 6745
70 % 3 3 6636
50 % 11 15 2284
40 % 11 15 2321
30 % 11 15 2307
Entity #8 | Chains: 7,G,P,Y
NUCLEOPORIN SEH1 protein, length: 360 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20585
95 % 1 1 18815
90 % 1 1 18460
70 % 1 1 21011
50 % 1 1 15363
40 % 1 1 17035
30 % 1 1 12911
Entity #9 | Chains: 8,H,Q,Z
NUCLEAR PORE COMPLEX PROTEIN NUP85 protein, length: 656 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20584
95 % 1 1 18814
90 % 1 1 18459
70 % 1 1 17161
50 % 1 1 15362
40 % 1 1 14229
30 % 1 1 12910

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures