Sequence Similarity Clusters for the Entities in PDB 4ZPV

Entity #1 | Chains: A,H
D12 Fab Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21175
95 % 2 2 23929 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 13 18 2505
70 % 2452 3058 1
50 % 5130 6427 1
40 % 5131 6428 1
30 % 5168 6475 1
Entity #2 | Chains: B,L
D12 Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26647
95 % 36 44 868 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 57 74 481
70 % 2025 2488 2
50 % 5131 6427 1
40 % 5132 6428 1
30 % 5169 6475 1
Entity #3 | Chains: R,S
Spike glycoprotein protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 8402
95 % 14 16 2318 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 14 16 2370
70 % 14 16 2440
50 % 15 17 2307
40 % 15 17 2328
30 % 15 17 2365

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures