Sequence Similarity Clusters for the Entities in PDB 4Z1M

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha, mitochondrial protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 436
95 % 23 43 301 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 23 43 316
70 % 30 63 176
50 % 30 114 123
40 % 30 114 143
30 % 30 114 148
Entity #2 | Chains: D,E,F
ATP synthase subunit beta, mitochondrial protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 39 294
95 % 24 42 361 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.0
PDBFlex
90 % 24 42 376
70 % 38 85 139
50 % 31 65 204
40 % 31 65 224
30 % 31 65 231
Entity #3 | Chains: G
ATP synthase subunit gamma, mitochondrial protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 39 1125
95 % 22 42 1327 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.3
PDBFlex
90 % 22 42 1364
70 % 23 44 1335
50 % 23 44 1357
40 % 30 62 801
30 % 34 76 670
Entity #4 | Chains: H,I,J
ATPase inhibitor, mitochondrial protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17099
95 % 4 7 6861 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 7 6896
70 % 4 7 6771
50 % 4 7 6464
40 % 4 7 6252
30 % 4 7 5927

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures