Sequence Similarity Clusters for the Entities in PDB 4YOJ

Entity #1 | Chains: A,B
3C-like proteinase protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6687
95 % 3 6 7295 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 3 6 7291
70 % 7 16 2129
50 % 20 110 355
40 % 23 132 235
30 % 23 132 248

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2YNA 1 A, B 3C-LIKE PROTEINASE 694007 3.4.22 | Details 3.4.22.69 | Details
2 5WKK 1 A Orf1a protein Peptidase C30 domain residues 3248-3553 1335626
3 4WME 1 A, B, C, D MERS-CoV 3CL protease 1335626
4 4MDS 1 A 3C-like proteinase UNP residues 3241-3542 694009 3.4.22 | Details
5 4RSP 1 A Orf1a protein 1335626
6 3TLO 1 A, B 3C-like proteinase 277944 3.4.22 | Details
7 5N19 1 A SARS coronavirus main protease 694009
8 3TNT 1 A SARS coronavirus main protease 694009 3.4.19.12 | Details 3.4.22 | Details 3.4.22.69 | Details
9 5ZQG 1 A, B Non-structural protein 28295
10 4XFQ 1 A, B PEDV main protease UNP RESIDUES 2998-3295 28295
11 2ZU5 1 A 3C-like proteinase 694009 3.4.22 | Details
12 5C5O 1 A, B 3C-like proteinase beta-site amyloid precursor protein-converting enzyme 694009 3.4.22.69 | Details
13 2H2Z 1 A Replicase polyprotein 1ab 3C-like proteinase, SARS-CoV main protease 694009 3.4.22 | Details
14 3SZN 1 A 3C-like proteinase 694009 3.4.22 | Details
15 2QCY 1 A 3C-like proteinase 694009 3.4.22 | Details
16 2DUC 1 A, B Replicase polyprotein 1ab 3C-like proteinase 694009 3.4.22 | Details
17 2OP9 1 A, B Replicase polyprotein 1ab (pp1ab, ORF1AB) 3C-like proteinase (3CL-PRO, 3CLp) 694009 3.4.22 | Details
18 2GT7 1 A, B 3C-like proteinase 694009 3.4.22 | Details
19 5WKL 1 A Orf1a protein Peptidase C30 domain residues 3248-3553 1335626
20 4YOI 1 A, B 3C-like proteinase 694007 3.4.22 | Details
21 2Z94 1 A Replicase polyprotein 1ab 3C-like proteinase 694009 3.4.22 | Details
22 2Z3C 1 A Replicase polyprotein 1ab (pp1ab) UNP residues 3241-3546, SARS-CoV 3C-like peptidase 694009 3.4.22 | Details
23 4YOJ 1 A, B 3C-like proteinase 694007 3.4.22 | Details
24 2ZU2 1 A, B 3C-like proteinase 11137 3.4.22 | Details
25 3SND 1 A, B 3C-like proteinase 694009 3.4.22 | Details
26 2Z9K 1 A, B 3C-like proteinase 694009 3.4.22 | Details
27 2Z9G 1 A 3C-like proteinase 694009 3.4.22 | Details
28 2V6N 1 A REPLICASE POLYPROTEIN 1AB SARS-COV MAIN PROTEINASE, RESIDUES 3241-3546 694009 3.4.24 | Details
29 2YNB 1 A, B 3C-LIKE PROTEINASE SG85 IS LINKED TO CYSTEINE 148 OF CHAIN B 694007 3.4.22.69 | Details
30 4TWY 1 A 3C-like proteinase 694009 3.4.22.69 | Details
31 2GZ7 1 A Replicase polyprotein 1ab 3C-like proteinase 694009 3.4.22 | Details
32 2A5I 1 A 3C-like peptidase 694009 3.4.22 | Details
33 1Q2W 1 A, B nonstructural polyprotein pp1a 3C-like proteinase, residues 3241-3544 694009 3.4.24 | Details
34 4YOG 1 A, B 3C-like proteinase 694007 3.4.22 | Details
35 5WKJ 1 A Orf1a protein Peptidase C30 domain residues 3248-3553 1335626
36 3VB7 1 A, B 3C-like proteinase 694009 3.4.22 | Details
37 2GT8 1 A 3C-like proteinase 694009 3.4.22 | Details
38 2AMD 1 A, B 3C-like proteinase 694009 3.4.22 | Details
39 2BX3 1 A MAIN PROTEINASE RESIDUES 3241-3546 694009 3.4.24 | Details
40 3V3M 1 A 3C-like proteinase 694009 3.4.19.12 | Details 3.4.22 | Details 3.4.22.69 | Details
41 2Z9J 1 A, B 3C-like proteinase 694009 3.4.22 | Details
42 4YLU 1 A, B, C, D ORF1a protein residues 3248-3553 1335626
43 4ZRO 1 A, B, C, D 3C-like proteinase 693997 3.4.22 | Details
44 4WMF 1 A, B, C MERS-CoV 3CL protease 1335626
45 2GX4 1 A 3C-like proteinase residues 1-306 694009 3.4.22 | Details
46 3TIT 1 A SARS coronavirus main protease 694009 3.4.19.12 | Details 3.4.22 | Details 3.4.22.69 | Details
47 2HOB 1 A Replicase polyprotein 1ab 3C-like proteinase 694009 3.4.22 | Details
48 3VB5 1 A, B 3C-like proteinase 694009 3.4.22 | Details
49 5N5O 1 A Replicase polyprotein 1ab 694009 2.1.1 | Details 2.7.7.48 | Details 3.1 | Details 3.1.13 | Details 3.4.19.12 | Details 3.4.22 | Details 3.4.22.69 | Details 3.6.4.12 | Details 3.6.4.13 | Details
50 3TNS 1 A SARS coronavirus main protease 694009 3.4.19.12 | Details 3.4.22 | Details 3.4.22.69 | Details
51 2C3S 1 A SARS COV 3C-LIKE PROTEINASE 694009 3.4.24 | Details
52 1UJ1 1 A, B 3C-like proteinase 694009 3.4.24 | Details
53 1LVO 1 A, B, C, D, E, F Replicase, hydrolase domain residues 2879-3180 693997
54 5C5N 1 A 3C-like proteinase beta-site amyloid precursor protein-converting enzyme 694009 3.4.22.69 | Details
55 2GTB 1 A 3C-like proteinase 694009 3.4.22 | Details
56 1WOF 1 A, B 3C-like proteinase 694009 3.4.24 | Details
57 3TIU 1 A SARS coronavirus main protease 694009 3.4.19.12 | Details 3.4.22 | Details 3.4.22.69 | Details
58 2GZ8 1 A Replicase polyprotein 1ab 3C-like proteinase 694009 3.4.22 | Details
59 2QIQ 1 A Replicase polyprotein 1ab 3CL proteinase 694009
60 2A5A 1 A 3C-like peptidase 694009 3.4.22 | Details
61 4HI3 1 A, B 3C-like proteinase 694009 3.4.22 | Details
62 2Q6F 1 A, B Infectious bronchitis virus (IBV) main protease 694014 3.4.22 | Details
63 2ZU4 1 A 3C-like proteinase 694009 3.4.22 | Details
64 3SN8 1 A 3C-like proteinase 694009 3.4.22 | Details
65 5WKM 1 A Orf1a protein Peptidase C30 domain residues 3248-3553 1335626
66 2Z9L 1 A, B 3C-like proteinase 694009 3.4.22 | Details
67 2Z3D 1 A Replicase polyprotein 1ab (pp1ab) UNP residues 3241-3546, SARS-CoV 3C-like peptidase 694009 3.4.22 | Details
68 3AW1 1 A, B 3C-Like Proteinase 694009 3.4.22.69 | Details
69 2ALV 1 A Replicase polyprotein 1ab 3CL proteinase, residues 3242-3543 694009 3.4.22 | Details
70 3VB4 1 A, B 3C-like proteinase 694009 3.4.22 | Details
71 5HYO 1 A, B PEDV 3CLpro 28295
72 3VB3 1 A, B 3C-like proteinase 694009 3.4.22 | Details
73 4F49 1 A, B, C, D 3C-like proteinase 693997 3.4.22 | Details
74 4ZUH 1 A, B PEDV 3C-Like protease UNP RESIDUES 2998-3296 28295
75 3EA8 1 A 3C-like proteinase 694009 3.4.22 | Details
76 2VJ1 1 A, B SARS CORONAVIRUS MAIN PROTEINASE RESIDUES 3242-3544 694009
77 2A5K 1 A, B 3C-like peptidase 694009 3.4.22 | Details
78 4WY3 1 A 3C-like proteinase 694009 3.4.22 | Details
79 5B6O 1 A, B 3C-like proteinase 694009 3.4.22.69 | Details
80 2GZ9 1 A Replicase polyprotein 1ab 3C-like proteinase 694009 3.4.22 | Details
81 2Z3E 1 A Replicase polyprotein 1ab (pp1ab) UNP residues 3241-3546, SARS-CoV 3C-like peptidase 694009 3.4.22 | Details
82 4YO9 1 A, B 3C-like proteinase 694007 3.4.22 | Details
83 6FV1 1 A, B, C Replicase polyprotein 1ab 277944 2.1.1 | Details 2.7.7.48 | Details 3.1 | Details 3.1.13 | Details 3.4.19.12 | Details 3.4.22 | Details 3.6.4.12 | Details 3.6.4.13 | Details
84 3M3S 1 A, B 3C-like proteinase 694009 3.4.22 | Details
85 5NH0 1 A Replicase polyprotein 1ab 277944 2.1.1 | Details 2.7.7.48 | Details 3.1 | Details 3.1.13 | Details 3.4.19.12 | Details 3.4.22 | Details 3.6.4.12 | Details 3.6.4.13 | Details
86 5NH0 2 B Replicase polyprotein 1ab 277944 2.1.1 | Details 2.7.7.48 | Details 3.1 | Details 3.1.13 | Details 3.4.19.12 | Details 3.4.22 | Details 3.6.4.12 | Details 3.6.4.13 | Details
87 5NH0 3 C Replicase polyprotein 1ab 277944 2.1.1 | Details 2.7.7.48 | Details 3.1 | Details 3.1.13 | Details 3.4.19.12 | Details 3.4.22 | Details 3.6.4.12 | Details 3.6.4.13 | Details
88 3F9F 1 A, B 3C-like proteinase 694009 3.4.22 | Details
89 5GWZ 1 A, B PEDV main protease 28295 3.4.22 | Details
90 1P9U 1 A, B, C, D, E, F putative coronavirus nsp2 (3CL-PRO) TGEV main proteinase 693997
91 3ATW 1 A, B 3C-Like Proteinase 694009 3.4.22.69 | Details
92 2AMQ 1 A, B 3C-like proteinase 694009 3.4.22 | Details
93 3EA9 1 A 3C-like proteinase 694009 3.4.22 | Details
94 4WMD 1 A, B, C ORF1a 1335626
95 3FZD 1 A 3C-like proteinase 694009 3.4.22 | Details
96 3AW0 1 A 3C-Like Proteinase 694009 3.4.22.69 | Details
97 3VB6 1 A, B 3C-like proteinase 694009 3.4.22 | Details
98 1UK2 1 A, B 3C-LIKE PROTEINASE 694009 3.4.24 | Details
99 3E91 1 A, B 3C-like proteinase 694009 3.4.22 | Details
100 3SNB 1 A 3C-like proteinase 694009 3.4.22 | Details
101 2Q6G 1 A, B severe acute respiratory syndrome coronavirus (SARS-CoV) 694009 3.4.22 | Details
102 2Q6D 1 A, B, C Infectious bronchitis virus (IBV) main protease 694014 3.4.22 | Details
103 5EU8 1 A main protease 693997
104 3SNE 1 A 3C-like proteinase 694009 3.4.22 | Details
105 1P9S 1 A, B Replicase polyprotein 1ab residue 2966-3265, 3C-like proteinase 11137 3.4.24 | Details
106 3EA7 1 A, B 3C-like proteinase 694009 3.4.22 | Details
107 3AVZ 1 A 3C-Like Proteinase 694009 3.4.22.69 | Details
108 4TWW 1 A, B 3C-like proteinase 694009 3.4.22.69 | Details
109 1UK3 1 A, B 3C-like proteinase 694009 3.4.24 | Details
110 1UK4 1 A, B 3C-like proteinase 694009 3.4.24 | Details
111 3M3V 1 A, B 3C-like proteinase 694009 3.4.22 | Details
112 3SNC 1 A 3C-like proteinase 694009 3.4.22 | Details
113 3D23 1 A, B, C, D 3C-like proteinase 290028 3.4.22 | Details
114 3EAJ 1 A, B 3C-like proteinase 694009 3.4.22 | Details
115 2QC2 1 A, B 3C-like proteinase 694009 3.4.22 | Details
116 3M3T 1 A 3C-like proteinase 694009 3.4.22 | Details
117 2D2D 1 A, B 3C-like proteinase 694009 3.4.24 | Details
118 2PWX 1 A 3C-like proteinase 3C-like proteinase domain 694009 3.4.22 | Details
119 3F9G 1 A, B 3C-like proteinase 694009 3.4.22 | Details
120 5GWY 1 A, B main protease 277944 3.4.22 | Details
121 6JIJ 1 A, B, C Replicative polyprotein 1ab 694005
122 3F9E 1 A 3C-like proteinase 694009 3.4.22 | Details
123 1Z1J 1 A, B 3C-like proteinase residues 1-306 694009 3.4.22 | Details
124 6FV2 1 A, B, C Replicase polyprotein 1ab 277944 2.1.1 | Details 2.7.7.48 | Details 3.1 | Details 3.1.13 | Details 3.4.19.12 | Details 3.4.22 | Details 3.6.4.12 | Details 3.6.4.13 | Details
125 2BX4 1 A 3C-LIKE PROTEINASE RESIDUES 3241-3546 694009 3.4.22 | Details 3.4.24 | Details
126 3SNA 1 A 3C-like proteinase 694009 3.4.22 | Details
127 2AMP 1 A, B 3C-like proteinase 693997 3.4.22 | Details
128 1Z1I 1 A 3C-like proteinase residues 1-306 694009 3.4.22 | Details
129 5C3N 1 A, B ORF1a protein UNP residues 3248-3553 1335626
130 3F9H 1 A, B 3C-like proteinase 694009 3.4.22 | Details
131 3D62 1 A 3C-like proteinase sequence database residues 3243-3541 694009 3.4.22 | Details
132 3IWM 1 A, B, C, D 3C-like proteinase 694009 3.4.22 | Details