Sequence Similarity Clusters for the Entities in PDB 4YLQ

Entity #1 | Chains: L
Coagulation factor VII protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 32 1541
95 % 1 32 2038 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 1 32 2050
70 % 1 32 2109
50 % 1 74 855
40 % 1 74 894
30 % 1 79 867
Entity #2 | Chains: H
Coagulation factor VII protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82336
95 % 1 101 481 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 1 101 506
70 % 1 101 545
50 % 1 101 568
40 % 21 289 177
30 % 181 1919 5
Entity #3 | Chains: T
Tissue factor protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 39 1132
95 % 1 40 1502 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 1 40 1530
70 % 1 41 1487
50 % 1 41 1520
40 % 1 41 1577
30 % 1 41 1602

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures