Sequence Similarity Clusters for the Entities in PDB 4YHL

Entity #1 | Chains: H
aDabi-Fab2b heavy chain protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 13070
95 % 4 7 8427 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.3
PDBFlex
90 % 16 58 637
70 % 712 2943 1
50 % 760 3094 1
40 % 760 3094 1
30 % 1499 6183 1
Entity #2 | Chains: L
aDabi-Fab2b light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 51259
95 % 5 11 5043 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 26 109 273
70 % 572 2399 2
50 % 727 3045 2
40 % 727 3045 2
30 % 1500 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures