Sequence Similarity Clusters for the Entities in PDB 4YA5

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 309 11
95 % 113 309 22 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 113 309 24
70 % 113 309 32
50 % 113 309 65
40 % 124 366 40
30 % 747 2273 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-4 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 305 18
95 % 113 305 29 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 113 305 31
70 % 113 305 39
50 % 113 305 72
40 % 124 360 45
30 % 124 362 47
Entity #11 | Chains: K,Y
Proteasome subunit beta type-5 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 182 74
95 % 92 247 59 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 92 247 62
70 % 121 312 26
50 % 121 316 61
40 % 121 316 76
30 % 124 339 29
Entity #12 | Chains: L,Z
Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 96 273 21
95 % 113 306 25 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 113 306 27
70 % 113 306 35
50 % 113 306 68
40 % 113 328 75
30 % 113 332 79
Entity #13 | Chains: M,a
Proteasome subunit beta type-7 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 306 15
95 % 113 306 27 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 113 306 29
70 % 113 306 37
50 % 113 306 69
40 % 113 306 85
30 % 113 306 89
Entity #14 | Chains: N,b
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 306 14
95 % 113 306 28 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 113 306 30
70 % 113 306 38
50 % 113 306 70
40 % 113 310 81
30 % 113 310 87
Entity #15 | Chains: c,d
Ac-PAE-ep protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,P
Proteasome subunit alpha type-3 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 309 9
95 % 113 309 19 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 113 309 22
70 % 113 309 30
50 % 124 364 35
40 % 124 366 42
30 % 748 2273 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-4 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 309 12
95 % 113 309 24 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 113 309 26
70 % 113 309 34
50 % 124 363 36
40 % 127 393 17
30 % 749 2273 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 112 308 13
95 % 113 309 23 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 113 310 21
70 % 113 310 29
50 % 124 365 34
40 % 124 365 43
30 % 750 2273 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-6 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 307 17
95 % 113 309 21 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 113 309 25
70 % 113 309 33
50 % 113 309 67
40 % 113 309 83
30 % 751 2273 2
Entity #6 | Chains: F,T
Probable proteasome subunit alpha type-7 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 108 264 24
95 % 108 264 41 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 108 264 45
70 % 108 264 53
50 % 108 264 90
40 % 108 264 105
30 % 108 264 107
Entity #7 | Chains: G,U
Proteasome subunit alpha type-1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 309 10
95 % 113 309 20 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 113 309 23
70 % 113 309 31
50 % 124 361 38
40 % 124 367 41
30 % 752 2273 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 8183
95 % 107 285 33 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 110 296 34
70 % 110 296 42
50 % 124 339 53
40 % 124 339 64
30 % 124 339 66
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 113 306 16
95 % 113 306 26 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 113 306 28
70 % 113 306 36
50 % 124 357 39
40 % 124 363 44
30 % 124 363 46

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures