Sequence Similarity Clusters for the Entities in PDB 4XPA

Entity #1 | Chains: A
Transporter protein, length: 545 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 13618
95 % 7 14 5665 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 7 14 5717
70 % 7 14 5436
50 % 7 28 2513
40 % 7 28 2546
30 % 7 28 2513
Entity #2 | Chains: L
Antibody fragment heavy chain-protein, 9D5-heavy chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 7588
95 % 9 15 4802 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 10 17 3953
70 % 1787 2273 2
50 % 2222 2886 2
40 % 2222 2886 2
30 % 4503 5855 1
Entity #3 | Chains: H
Antibody fragment light chain-protein, 9D5-light chain protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 4861
95 % 7 14 5664 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 7 14 5716
70 % 2141 2784 1
50 % 2252 2927 1
40 % 2252 2927 1
30 % 4504 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures