Sequence Similarity Clusters for the Entities in PDB 4XMN

Entity #1 | Chains: A
Protein transport protein SEC13 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4606
95 % 7 12 3817 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 12 3954
70 % 7 12 3936
50 % 9 15 2293
40 % 9 15 2345
30 % 9 15 2331
Entity #2 | Chains: B
Nucleoporin NUP145 protein, length: 652 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39256
95 % 1 2 39247 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 30468
70 % 1 2 33222
50 % 1 2 28930
40 % 1 2 26272
30 % 1 2 23305
Entity #3 | Chains: F
Nucleoporin NUP84 protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 14077
95 % 3 4 13789 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.3
PDBFlex
90 % 3 4 13597
70 % 3 4 12853
50 % 3 4 11755
40 % 3 4 11032
30 % 3 4 10135
Entity #4 | Chains: E
Nucleoporin NUP120 protein, length: 1045 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74402
95 % 1 2 39248 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 1 2 37370
70 % 1 2 33223
50 % 1 2 28931
40 % 1 2 26273
30 % 1 2 23306
Entity #5 | Chains: D
Nucleoporin NUP85 protein, length: 685 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74408
95 % 1 2 37868 Flexibility: Medium
Max RMSD: 5.0, Avg RMSD: 5.0
PDBFlex
90 % 1 2 36096
70 % 1 2 31769
50 % 1 2 28037
40 % 1 2 25488
30 % 1 2 22631
Entity #6 | Chains: L
Antibody 87 light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2911
95 % 200 210 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 506 530 4
70 % 2230 2368 2
50 % 2836 3003 2
40 % 2836 3003 2
30 % 5747 6095 1
Entity #7 | Chains: H
Antibody 87 heavy chain protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75381
95 % 1 1 53740
90 % 310 322 19
70 % 2750 2903 1
50 % 2874 3048 1
40 % 2874 3048 1
30 % 5748 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures