Sequence Similarity Clusters for the Entities in PDB 4XC1

Entity #1 | Chains: L
4E10 FAB LIGHT CHAIN protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 22 1018
95 % 5 22 1375 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 17 797 2
70 % 59 2418 2
50 % 75 3071 2
40 % 75 3071 2
30 % 163 6236 1
Entity #2 | Chains: H
4E10 FAB HEAVY CHAIN protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 20 1074
95 % 5 23 1371 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 5 23 1409
70 % 75 2969 1
50 % 85 3121 1
40 % 85 3121 1
30 % 164 6236 1
Entity #3 | Chains: P
MODIFIED FRAGMENT OF HIV-1 GLYCOPROTEIN (GP41) INCLUDING THE MPER REGION 671-683 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures