Sequence Similarity Clusters for the Entities in PDB 4X0Y

Entity #1 | Chains: A,B,C,D,E
Major capsid protein protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 1797
95 % 1 18 633 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 1 18 664
70 % 2 22 534
50 % 7 48 144
40 % 7 48 160
30 % 7 52 152

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4MBY 1 A, B, C, D, E, F, G, H, I, J Major Capsid Protein VP1 12480
2 4U60 1 A, B, C, D, E Structural protein VP1 UNP residues 31-304 1891727
3 4U62 1 A, B, C, D, E, F, G, H, I, J Structural protein VP1 1891727
4 5CPU 1 A, B, C, D, E VP1 1891730
5 4U61 1 A, B, C, D, E, F, G, H, I, J Structural protein VP1 UNP residues 31-304 1891727
6 4MJ0 1 A, B, C, D, E VP1 capsid protein 1891762
7 4X0Y 1 A, B, C, D, E Major capsid protein UNP residues 23-290 1891763
8 5CPZ 1 A, B, C, D, E Capsid protein VP1 N- and C-terminally truncated version of VP1. The first 4 amino acids at the N-terminus belong to the purification tag. UNP residues 34-317 1891730
9 5CPW 1 A, B, C, D, E VP1 1891730
10 4X17 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
11 4MBZ 1 A, B, C, D, E, F, G, H, I, J Major Capsid Protein VP1 12480
12 6HKV 1 A, B, C, D, E, F, G, H, I, J Capsid protein VP1 1891727
13 4WDZ 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
14 4X16 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
15 5CPX 1 A, B, C, D, E VP1 1891730
16 4X0Z 1 A, B, C, D, E Major capsid protein UNP residues 23-290 1891763
17 4JCE 1 A, B, C, D, E Major capsid protein VP1 1891763
18 4FMH 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T VP1 UNP residues 37-319 1891726
19 5CQ0 1 A, B, C, D, E Capsid protein VP1 1891730
20 4X12 1 A, B, C, D, E Major capsid protein UNP residues 23-290 1891763
21 5CPY 1 A, B, C, D, E VP1 1891730
22 4X10 1 A, B, C, D, E Major capsid protein UNP residues 23-290 1891763
23 4MBX 1 A, B, C, D, E, F, G, H, I, J Major Capsid Protein VP1 12480
24 1VPS 1 A, B, C, D, E POLYOMAVIRUS VP1 PENTAMER 1891730
25 4X13 1 A, B, C, D, E Major capsid protein UNP residues 23-290 1891763
26 4MJ1 1 A, B, C, D, E VP1 capsid protein 1891762
27 3NXG 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
28 4JCD 1 A, B, C, D, E Major capsid protein VP1 1891763
29 4WDY 1 A, B, C, D, E Major capsid protein VP1 UNP Residues 23-290 1891763
30 1VPN 1 A, B, C, D, E POLYOMAVIRUS VP1 PENTAMER 1891730
31 3NXD 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
32 6HKU 1 A, B, C, D, E, F, G, H, I, J Capsid protein VP1 1891727
33 4POS 1 A, B, C, D, E, F, G, H, I, J VP1 UNP residues 32-305 943908
34 4FMI 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T VP1 UNP residues 37-319 1891726
35 4POQ 1 A, B, C, D, E, F, G, H, I, J VP1 UNP residues 32-305 943908
36 4X15 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
37 4POR 1 A, B, C, D, E, F, G, H, I, J VP1 UNP residues 32-305 943908
38 4WE0 1 A, B, C, D, E Major capsid protein VP1 1891763
39 4FMG 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T VP1 UNP residues 37-319 1891726
40 4POT 1 A, B, C, D, E, F, G, H, I, J VP1 UNP residues 32-305 943908
41 4JCF 1 A, B, C, D, E Major capsid protein VP1 1891763
42 4X11 1 A, B, C, D, E Major capsid protein UNP residues 23-290 1891763
43 4U5Z 1 A, B, C, D, E, F, G, H, I, J Structural protein VP1 UNP residues 31-304 1891727
44 3BWR 1 A, B, C, D, E Capsid protein VP1 1891767
45 4X14 1 A, B, C, D, E Major capsid protein VP1 UNP residues 23-290 1891763
46 1CN3 1 A, B, C, D, E COAT PROTEIN VP1 RESIDUES 35-317 36362
47 4FMJ 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T VP1 1891726
48 3BWQ 1 A, B, C, D, E Capsid protein VP1 1891767