Sequence Similarity Clusters for the Entities in PDB 4WZJ

Entity #1 | Chains: A,AA,AAA,AAAA,H,HH,HHH,HHHH,O,OO,OOO,OOOO
Small nuclear ribonucleoprotein Sm D3 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 19 836
95 % 1 20 1047
90 % 1 20 1080
70 % 1 20 1106
50 % 1 20 1139
40 % 1 20 1177
30 % 1 20 1224
Entity #2 | Chains: B,BB,BBB,BBBB,I,II,III,IIII,P,PP,PPP,PPPP
Small nuclear ribonucleoprotein-associated proteins B and B' protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 2540
95 % 2 4 3152
90 % 2 4 3152
70 % 2 4 3222
50 % 2 4 3195
40 % 2 4 3182
30 % 2 4 3121
Entity #3 | Chains: C,CC,CCC,CCCC,J,JJ,JJJ,JJJJ,Q,QQ,QQQ,QQQQ
Small nuclear ribonucleoprotein Sm D1 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 23 508
95 % 4 23 698
90 % 4 23 725
70 % 4 24 741
50 % 4 24 782
40 % 4 24 826
30 % 4 24 855
Entity #4 | Chains: D,DD,DDD,DDDD,K,KK,KKK,KKKK,R,RR,RRR,RRRR
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 442
95 % 9 30 589
90 % 9 30 616
70 % 9 30 657
50 % 9 56 443
40 % 9 56 466
30 % 9 56 483
Entity #5 | Chains: F,FF,FFF,FFFF,M,MM,MMM,MMMM,T,TT,TTT,TTTT
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 27 474
95 % 8 27 657
90 % 8 27 677
70 % 8 27 722
50 % 8 27 755
40 % 8 27 796
30 % 8 27 832
Entity #6 | Chains: E,EE,EEE,EEEE,L,LL,LLL,LLLL,S,SS,SSS,SSSS
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 28 447
95 % 8 28 614
90 % 8 28 647
70 % 8 28 681
50 % 8 28 722
40 % 8 28 755
30 % 8 28 794
Entity #7 | Chains: G,GG,GGG,GGGG,N,NN,NNN,NNNN,U,UU,UUU,UUUU
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 28 441
95 % 7 28 607
90 % 7 28 634
70 % 7 28 679
50 % 7 54 449
40 % 7 55 471
30 % 7 55 490
Entity #8 | Chains: V,VV,VVV,VVVV,X,XX,XXX,XXXX,Y,YY,YYY,YYYY
U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. rna, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures