Sequence Similarity Clusters for the Entities in PDB 4WV1

Entity #1 | Chains: C,F
Fibroblast growth factor receptor 2 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 7748
95 % 4 6 8545 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 6 8474
70 % 4 6 8151
50 % 5 7 6443
40 % 5 7 6214
30 % 5 7 5891
Entity #2 | Chains: B,E
Fab heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42983
95 % 2 2 27830 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 139 322 19
70 % 1207 2903 1
50 % 1278 3048 1
40 % 1278 3048 1
30 % 2533 6095 1
Entity #3 | Chains: A,D
Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41366
95 % 75 210 78 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 208 530 4
70 % 984 2368 2
50 % 1240 3003 2
40 % 1240 3003 2
30 % 2534 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures