Sequence Similarity Clusters for the Entities in PDB 4WJG

Entity #1 | Chains: A,F,K,P,U,Z
Hemoglobin subunit alpha protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 203 219 43
95 % 239 256 40 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 240 257 44
70 % 317 340 22
50 % 688 735 7
40 % 688 735 7
30 % 736 783 10
Entity #2 | Chains: 1,B,G,L,Q,V
Hemoglobin subunit beta protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 166 78
95 % 241 257 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 245 261 37
70 % 330 353 17
50 % 689 735 7
40 % 689 735 7
30 % 737 783 10
Entity #3 | Chains: 2,C,H,M,R,W
Haptoglobin protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16232
95 % 1 1 14002 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 13953
70 % 2 2 8443
50 % 2 2 7901
40 % 2 2 7621
30 % 6 6 4740
Entity #4 | Chains: 3,D,I,N,S,X
Iron-regulated surface determinant protein H protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13023
95 % 1 2 12881 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 2 12711
70 % 1 2 12081
50 % 1 2 11073
40 % 1 3 7981
30 % 1 3 7470
Entity #5 | Chains: 4,E,J,O,T,Y
Haptoglobin-hemoglobin receptor protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16233
95 % 1 1 15395 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 15162
70 % 1 1 14258
50 % 1 1 12890
40 % 1 1 12037
30 % 1 1 11000

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures