Sequence Similarity Clusters for the Entities in PDB 4WJ3

Entity #1 | Chains: A,D,G,J
Glutamyl-tRNA(Gln) amidotransferase subunit A protein, length: 484 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19834
95 % 1 1 19033 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 1 21771
70 % 1 1 20023
50 % 10 10 2089
40 % 13 13 1899
30 % 18 18 1597
Entity #2 | Chains: B,E,H,K
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B protein, length: 481 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20733
95 % 1 1 19035
90 % 1 1 21772
70 % 1 1 17303
50 % 2 2 12292
40 % 2 2 11498
30 % 2 2 10554
Entity #3 | Chains: C,F,I,L
Glutamyl-tRNA(Gln) amidotransferase subunit C protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25687
95 % 1 1 19034 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 1 18629
70 % 1 1 17302
50 % 1 1 15535
40 % 1 1 14424
30 % 1 1 13091
Entity #4 | Chains: M,N,O,P
Aspartate--tRNA(Asp/Asn) ligase protein, length: 599 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18125
95 % 2 2 17875 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.6
PDBFlex
90 % 2 2 17540
70 % 2 2 16369
50 % 11 11 3465
40 % 12 12 2891
30 % 12 12 2843
Entity #5 | Chains: Q,R,S,T
76mer-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures