Sequence Similarity Clusters for the Entities in PDB 4WHT

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,X
Heavy chain of the Fab fragment derived from neutralizing antibody 3/11 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 3883
95 % 1 2 4729 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 1 2 4794
70 % 3 8 3285
50 % 1127 3004 1
40 % 1127 3004 1
30 % 2236 6005 1
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,Y
Light chain of the Fab fragment derived from neutralizing antibody 3/11 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4278
95 % 1 2 5100 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 2 3 4464
70 % 862 2330 2
50 % 1095 2959 2
40 % 1095 2959 2
30 % 2237 6005 1
Entity #3 | Chains: a,c,e,g,i,k,m,o,q,s,u,x
Epitope peptide protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WHT 2 B, D, F, H, J, L, N, P, R, T, V, Y Light chain of the Fab fragment derived from neutralizing antibody 3/11 10116
2 4WHY 3 H, J, L, N Light chain of Fab fragment derived from neutralizing antibody 3/11 10116