Sequence Similarity Clusters for the Entities in PDB 4V8G

Entity #1 | Chains: AA,CA
16S Ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S Ribosomal Protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 333 36
95 % 115 334 58
90 % 115 334 63
70 % 115 334 74
50 % 139 549 26
40 % 139 549 34
30 % 139 586 32
Entity #11 | Chains: AK,CK
30S Ribosomal Protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 335 34
95 % 115 335 55
90 % 115 335 60
70 % 115 335 72
50 % 138 543 29
40 % 138 543 38
30 % 138 543 41
Entity #12 | Chains: AL,CL
30S Ribosomal Protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 244 61
95 % 115 342 45
90 % 115 342 49
70 % 139 547 17
50 % 139 565 22
40 % 139 565 28
30 % 139 565 33
Entity #13 | Chains: AM,CM
30S Ribosomal Protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 336 30
95 % 115 336 50
90 % 115 336 56
70 % 115 336 68
50 % 140 549 27
40 % 140 552 35
30 % 140 552 38
Entity #14 | Chains: AN,CN
30S Ribosomal Protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 334 35
95 % 115 334 56
90 % 115 334 61
70 % 115 341 60
50 % 115 355 89
40 % 115 355 103
30 % 115 355 103
Entity #15 | Chains: AO,CO
30S Ribosomal Protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 338 29
95 % 119 343 43
90 % 119 343 47
70 % 119 343 58
50 % 145 561 23
40 % 145 561 30
30 % 145 561 34
Entity #16 | Chains: AP,CP
30S Ribosomal Protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 330 37
95 % 115 335 54
90 % 115 335 59
70 % 115 335 70
50 % 115 335 94
40 % 115 335 109
30 % 115 335 112
Entity #17 | Chains: AQ,CQ
30S Ribosomal Protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 227 58
95 % 115 328 59
90 % 115 332 64
70 % 115 332 75
50 % 115 332 96
40 % 115 332 111
30 % 115 332 114
Entity #18 | Chains: AR,CR
30S Ribosomal Protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 95 225 62
95 % 102 279 74
90 % 102 279 79
70 % 102 279 89
50 % 102 279 112
40 % 102 279 130
30 % 102 279 140
Entity #19 | Chains: AS,CS
30S Ribosomal Protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 293 44
95 % 106 293 65
90 % 106 293 71
70 % 116 338 63
50 % 139 550 24
40 % 139 550 32
30 % 139 550 36
Entity #2 | Chains: AB,CB
30S Ribosomal Protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 334 32
95 % 115 336 49
90 % 115 336 54
70 % 115 336 67
50 % 138 541 30
40 % 138 547 36
30 % 138 547 39
Entity #20 | Chains: AT,CT
30S Ribosomal Protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 278 48
95 % 115 334 57
90 % 115 334 62
70 % 115 334 73
50 % 115 334 95
40 % 115 334 110
30 % 115 334 113
Entity #21 | Chains: AU,CU
30S Ribosomal Protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 292 46
95 % 105 292 68
90 % 105 292 74
70 % 105 292 85
50 % 105 292 108
40 % 105 292 127
30 % 105 292 135
Entity #22 | Chains: AV,CV
Ribosome modulation factor protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 19472
95 % 1 3 17263
90 % 1 3 16967
70 % 1 3 15874
50 % 1 4 12489
40 % 1 4 11668
30 % 1 4 10738
Entity #23 | Chains: BA,DA
23S Ribosomal RNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BB,DB
5S Ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #25 | Chains: BD,DD
50S Ribosomal Protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 202 66
95 % 72 202 92
90 % 72 202 98
70 % 73 226 98
50 % 96 474 45
40 % 96 474 57
30 % 96 474 60
Entity #26 | Chains: BE,DE
50S Ribosomal Protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 201 72
95 % 71 201 96
90 % 71 201 101
70 % 71 201 116
50 % 102 480 44
40 % 102 484 53
30 % 102 485 56
Entity #27 | Chains: BF,DF
50S Ribosomal Protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 186 84
95 % 72 202 99
90 % 72 202 105
70 % 72 202 118
50 % 73 231 121
40 % 73 241 136
30 % 97 466 69
Entity #28 | Chains: BG,DG
50S Ribosomal Protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 187 81
95 % 74 204 84
90 % 74 204 90
70 % 75 228 96
50 % 101 469 48
40 % 101 469 62
30 % 101 469 64
Entity #29 | Chains: BH,DH
50S Ribosomal Protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 201 70
95 % 71 201 89
90 % 71 201 95
70 % 71 201 112
50 % 73 271 106
40 % 96 475 55
30 % 96 479 55
Entity #3 | Chains: AC,CC
30S Ribosomal Protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 279 49
95 % 101 279 75
90 % 101 279 80
70 % 101 279 90
50 % 105 366 86
40 % 105 366 101
30 % 105 366 101
Entity #30 | Chains: BI,DI
50S Ribosomal Protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 144 108
95 % 63 166 126
90 % 63 166 133
70 % 63 166 146
50 % 63 171 167
40 % 85 359 97
30 % 85 372 94
Entity #31 | Chains: BN,DN
50S Ribosomal Protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 197 75
95 % 71 198 102
90 % 71 198 111
70 % 71 198 122
50 % 71 203 137
40 % 94 447 70
30 % 94 447 75
Entity #32 | Chains: BO,DO
50S Ribosomal Protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 176 92
95 % 71 201 94
90 % 71 201 102
70 % 72 225 99
50 % 96 487 36
40 % 96 487 47
30 % 96 487 50
Entity #33 | Chains: BP,DP
50S Ribosomal Protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 201 68
95 % 71 201 97
90 % 71 201 103
70 % 71 201 119
50 % 71 243 118
40 % 95 469 64
30 % 95 469 66
Entity #34 | Chains: BQ,DQ
50S Ribosomal Protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 185 86
95 % 71 202 87
90 % 71 202 93
70 % 72 229 97
50 % 95 472 47
40 % 95 472 59
30 % 95 472 62
Entity #35 | Chains: BR,DR
50S Ribosomal Protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 206 56
95 % 72 206 81
90 % 72 206 87
70 % 72 206 105
50 % 96 432 55
40 % 96 471 52
30 % 96 473 54
Entity #36 | Chains: BS,DS
50S Ribosomal Protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 186 82
95 % 71 186 112
90 % 71 186 120
70 % 71 186 132
50 % 95 454 54
40 % 95 435 73
30 % 95 435 78
Entity #37 | Chains: BT,DT
50S Ribosomal Protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 182 90
95 % 71 199 100
90 % 71 199 108
70 % 68 191 129
50 % 68 191 149
40 % 68 191 163
30 % 68 191 167
Entity #38 | Chains: BU,DU
50S Ribosomal Protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 196 76
95 % 71 201 95
90 % 71 201 100
70 % 71 201 117
50 % 96 474 42
40 % 96 482 49
30 % 96 482 51
Entity #39 | Chains: BV,DV
50S Ribosomal Protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 201 69
95 % 71 201 91
90 % 71 201 97
70 % 71 201 120
50 % 72 261 111
40 % 95 469 63
30 % 95 469 65
Entity #4 | Chains: AD,CD
30S Ribosomal Protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 328 38
95 % 115 336 48
90 % 115 336 55
70 % 115 336 65
50 % 115 360 88
40 % 138 555 31
30 % 138 555 35
Entity #40 | Chains: BW,DW
50S Ribosomal Protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 209 60
95 % 73 210 82
90 % 73 210 88
70 % 73 210 106
50 % 96 443 56
40 % 96 443 72
30 % 96 443 76
Entity #41 | Chains: BX,DX
50S Ribosomal Protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 202 64
95 % 71 202 86
90 % 71 202 92
70 % 71 202 110
50 % 72 228 123
40 % 95 471 61
30 % 95 471 63
Entity #42 | Chains: BY,DY
50S Ribosomal Protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 201 65
95 % 71 201 90
90 % 71 201 96
70 % 71 201 113
50 % 94 447 53
40 % 94 449 69
30 % 94 449 74
Entity #43 | Chains: BZ,DZ
50S Ribosomal Protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 201 73
95 % 73 202 88
90 % 73 202 94
70 % 73 202 111
50 % 73 202 138
40 % 73 202 154
30 % 73 214 156
Entity #44 | Chains: B0,D0
50S Ribosomal Protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 183 87
95 % 72 202 85
90 % 72 202 91
70 % 72 202 109
50 % 97 471 46
40 % 97 471 58
30 % 97 471 61
Entity #45 | Chains: B1,D1
50S Ribosomal Protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 172 97
95 % 71 193 106
90 % 71 193 113
70 % 71 193 124
50 % 71 193 142
40 % 71 193 158
30 % 71 193 163
Entity #46 | Chains: B2,D2
50S Ribosomal Protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 186 80
95 % 71 194 108
90 % 71 194 117
70 % 71 194 126
50 % 71 194 144
40 % 94 400 84
30 % 95 426 81
Entity #47 | Chains: B3,D3
50S Ribosomal Protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 208 59
95 % 72 208 83
90 % 72 208 89
70 % 72 208 107
50 % 72 208 136
40 % 96 464 66
30 % 96 464 68
Entity #48 | Chains: B4,D4
50S Ribosomal Protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 184 93
95 % 71 184 118
90 % 71 184 128
70 % 71 184 138
50 % 71 201 151
40 % 71 281 129
30 % 71 282 139
Entity #49 | Chains: B5,D5
50S Ribosomal Protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 185 85
95 % 71 196 107
90 % 71 196 115
70 % 71 196 125
50 % 72 230 125
40 % 72 230 143
30 % 95 457 72
Entity #5 | Chains: AE,CE
30S Ribosomal Protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 335 33
95 % 115 335 53
90 % 115 335 58
70 % 115 335 71
50 % 139 545 28
40 % 139 545 37
30 % 139 545 40
Entity #50 | Chains: B6,D6
50S Ribosomal Protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 181 91
95 % 57 182 117
90 % 57 182 125
70 % 57 182 136
50 % 57 207 145
40 % 81 430 79
30 % 81 430 86
Entity #51 | Chains: B7,D7
50S Ribosomal Protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 201 71
95 % 71 201 93
90 % 71 201 99
70 % 71 201 114
50 % 95 468 49
40 % 95 468 65
30 % 95 468 67
Entity #52 | Chains: B8,D8
50S Ribosomal Protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 202 67
95 % 72 202 98
90 % 72 202 104
70 % 72 202 115
50 % 73 230 122
40 % 73 240 138
30 % 73 240 145
Entity #53 | Chains: B9,D9
50S Ribosomal Protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 149 113
95 % 48 149 146
90 % 48 149 155
70 % 49 212 135
50 % 71 408 77
40 % 71 408 93
30 % 71 408 93
Entity #6 | Chains: AF,CF
30S Ribosomal Protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 117 340 26
95 % 125 348 40
90 % 125 348 44
70 % 125 348 56
50 % 125 348 90
40 % 125 348 104
30 % 125 348 105
Entity #7 | Chains: AG,CG
30S Ribosomal Protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 339 27
95 % 116 340 47
90 % 116 340 52
70 % 116 338 64
50 % 139 479 51
40 % 139 485 67
30 % 139 485 70
Entity #8 | Chains: AH,CH
30S Ribosomal Protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 116 335 31
95 % 116 335 51
90 % 116 339 51
70 % 116 339 62
50 % 117 364 84
40 % 141 560 29
30 % 156 760 21
Entity #9 | Chains: AI,CI
30S Ribosomal Protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 234 63
95 % 115 335 52
90 % 115 335 57
70 % 115 335 69
50 % 138 538 31
40 % 138 538 39
30 % 138 538 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures