Sequence Similarity Clusters for the Entities in PDB 4V7V

Entity #1 | Chains: AA
16S rRNA rna, length: 1533 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AJ,CJ
30S ribosomal protein S10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 167 141
95 % 24 168 187
90 % 24 168 200
70 % 24 168 220
50 % 136 514 24
40 % 136 514 32
30 % 136 536 31
Entity #11 | Chains: AK,CK
30S ribosomal protein S11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 149
95 % 23 165 199
90 % 23 165 213
70 % 23 165 232
50 % 135 513 26
40 % 135 513 34
30 % 135 513 38
Entity #12 | Chains: AL,CL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 147 173
95 % 24 168 190
90 % 24 168 204
70 % 136 517 15
50 % 136 532 18
40 % 136 532 25
30 % 136 532 32
Entity #13 | Chains: AM
30S ribosomal protein S13 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 169 144
95 % 24 169 194
90 % 24 169 209
70 % 24 169 227
50 % 136 517 25
40 % 136 517 33
30 % 136 517 37
Entity #14 | Chains: AN,CN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 133 182
95 % 23 161 205
90 % 23 161 218
70 % 23 161 238
50 % 23 163 243
40 % 23 169 247
30 % 23 170 258
Entity #15 | Chains: AO,CO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 135 187
95 % 24 167 191
90 % 24 167 205
70 % 24 167 224
50 % 142 526 20
40 % 142 526 28
30 % 142 526 34
Entity #16 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 166 153
95 % 24 166 203
90 % 24 166 217
70 % 24 166 236
50 % 24 166 244
40 % 24 166 253
30 % 24 166 267
Entity #17 | Chains: AQ,CQ
30S ribosomal protein S17 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 146
95 % 23 165 195
90 % 23 165 210
70 % 23 165 228
50 % 23 165 239
40 % 23 165 252
30 % 23 165 265
Entity #18 | Chains: AR,CR
30S ribosomal protein S18 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 49 545
95 % 19 49 735
90 % 19 49 773
70 % 19 49 816
50 % 19 49 873
40 % 19 53 848
30 % 19 53 883
Entity #19 | Chains: AS,CS
30S ribosomal protein S19 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 164 151
95 % 23 164 202
90 % 23 164 216
70 % 23 164 234
50 % 136 519 23
40 % 136 519 31
30 % 136 519 36
Entity #2 | Chains: AB,CB
30S ribosomal protein S2 protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 161 154
95 % 23 161 207
90 % 23 161 220
70 % 23 161 240
50 % 135 506 28
40 % 135 512 35
30 % 135 512 39
Entity #20 | Chains: AT,CT
30S ribosomal protein S20 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 164 152
95 % 23 164 201
90 % 23 164 215
70 % 23 164 235
50 % 23 164 242
40 % 23 185 225
30 % 23 185 235
Entity #21 | Chains: AU,CU
30S ribosomal protein S21 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 44 606
95 % 19 44 828
90 % 19 44 867
70 % 19 44 919
50 % 19 45 931
40 % 19 45 971
30 % 19 46 982
Entity #22 | Chains: BA,DA
23S rRNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: BB
5S rRNA rna, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: BC,DC
50S ribosomal protein L2 protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 171 136
95 % 23 171 181
90 % 23 171 192
70 % 23 171 214
50 % 93 432 50
40 % 93 432 58
30 % 93 432 60
Entity #25 | Chains: BD,DD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 183 123
95 % 30 183 163
90 % 30 183 174
70 % 30 183 195
50 % 99 438 51
40 % 99 442 55
30 % 99 443 57
Entity #26 | Chains: BE,DE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 174 131
95 % 23 174 175
90 % 23 174 186
70 % 23 174 209
50 % 23 174 224
40 % 94 423 65
30 % 94 424 67
Entity #27 | Chains: BF
50S ribosomal protein L5 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 178 128
95 % 24 178 170
90 % 24 178 182
70 % 24 178 203
50 % 97 429 52
40 % 97 429 59
30 % 97 429 61
Entity #28 | Chains: BG,DG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 173 132
95 % 23 173 176
90 % 23 173 187
70 % 23 173 210
50 % 23 173 225
40 % 24 219 203
30 % 93 439 55
Entity #29 | Chains: BH,DH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 156 166
95 % 21 157 215
90 % 21 157 229
70 % 21 157 248
50 % 21 157 266
40 % 83 339 98
30 % 83 342 98
Entity #3 | Chains: AC,CC
30S ribosomal protein S3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 86 312
95 % 19 86 423
90 % 19 86 453
70 % 19 86 484
50 % 32 154 253
40 % 32 154 267
30 % 32 160 268
Entity #30 | Chains: BI,DI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 163 156
95 % 23 163 206
90 % 23 163 219
70 % 23 163 239
50 % 36 259 151
40 % 36 259 164
30 % 36 266 167
Entity #31 | Chains: BJ,DJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 175 126
95 % 23 175 169
90 % 23 175 180
70 % 23 175 200
50 % 23 209 194
40 % 92 405 71
30 % 92 405 77
Entity #32 | Chains: BK,DK
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 176 122
95 % 23 176 165
90 % 23 176 176
70 % 23 176 196
50 % 93 445 44
40 % 93 445 52
30 % 93 445 53
Entity #33 | Chains: BL,DL
50S ribosomal protein L15 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 175 127
95 % 23 175 168
90 % 23 175 178
70 % 23 175 201
50 % 23 175 223
40 % 92 427 61
30 % 92 427 63
Entity #34 | Chains: BM,DM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 163 161
95 % 23 171 184
90 % 23 171 195
70 % 23 171 217
50 % 92 433 48
40 % 92 433 56
30 % 92 433 58
Entity #35 | Chains: BN,DN
50S ribosomal protein L17 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 171 137
95 % 23 174 173
90 % 23 174 184
70 % 23 174 207
50 % 93 398 57
40 % 93 429 54
30 % 93 431 56
Entity #36 | Chains: BO,DO
50S ribosomal protein L18 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 172 135
95 % 23 172 180
90 % 23 172 190
70 % 23 172 212
50 % 92 413 59
40 % 92 413 73
30 % 92 413 78
Entity #37 | Chains: BP,DP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 174 129
95 % 23 174 172
90 % 23 174 183
70 % 23 174 206
50 % 23 215 191
40 % 23 215 202
30 % 23 215 210
Entity #38 | Chains: BQ,DQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 175 125
95 % 23 175 166
90 % 23 175 179
70 % 23 175 198
50 % 93 432 47
40 % 93 440 53
30 % 93 440 54
Entity #39 | Chains: BR,DR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 171 138
95 % 23 171 183
90 % 23 171 194
70 % 23 171 213
50 % 23 171 228
40 % 92 427 63
30 % 92 427 65
Entity #4 | Chains: AD,CD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 148
95 % 23 165 198
90 % 23 165 212
70 % 23 165 231
50 % 23 165 241
40 % 135 520 30
30 % 135 520 35
Entity #40 | Chains: BS,DS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 174 130
95 % 23 174 174
90 % 23 174 185
70 % 23 174 208
50 % 94 401 61
40 % 94 401 75
30 % 94 401 79
Entity #41 | Chains: BT,DT
50S ribosomal protein L23 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 178 120
95 % 23 178 159
90 % 23 178 171
70 % 23 178 192
50 % 23 178 219
40 % 23 178 235
30 % 23 178 249
Entity #42 | Chains: BU,DU
50S ribosomal protein L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 177 121
95 % 23 177 162
90 % 23 177 172
70 % 23 177 193
50 % 92 405 60
40 % 92 407 70
30 % 92 407 76
Entity #43 | Chains: BV,DV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 178 119
95 % 24 178 156
90 % 24 178 168
70 % 24 178 189
50 % 25 179 211
40 % 25 179 224
30 % 25 179 234
Entity #44 | Chains: BW,DW
50S ribosomal protein L27 protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 173 134
95 % 24 174 177
90 % 24 174 188
70 % 24 203 168
50 % 94 430 49
40 % 94 430 57
30 % 94 430 59
Entity #45 | Chains: BX,DX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 158 160
95 % 23 158 212
90 % 23 158 224
70 % 23 158 244
50 % 23 160 250
40 % 23 160 263
30 % 23 160 275
Entity #46 | Chains: BY,DY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 178 118
95 % 23 178 155
90 % 23 178 170
70 % 23 178 191
50 % 23 178 218
40 % 92 366 89
30 % 92 392 82
Entity #47 | Chains: BZ,DZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 175 124
95 % 23 175 167
90 % 23 175 181
70 % 23 175 199
50 % 23 222 182
40 % 93 423 64
30 % 93 423 66
Entity #48 | Chains: B0,D0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 172 133
95 % 23 172 178
90 % 23 172 189
70 % 23 172 211
50 % 23 172 227
40 % 23 196 217
30 % 92 419 71
Entity #49 | Chains: B1,D1
50S ribosomal protein L33 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 171 139
95 % 23 171 182
90 % 23 171 193
70 % 23 171 215
50 % 23 196 200
40 % 78 391 84
30 % 78 391 86
Entity #5 | Chains: AE,CE
30S ribosomal protein S5 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 166 145
95 % 23 166 193
90 % 23 166 208
70 % 23 166 226
50 % 136 510 27
40 % 136 510 36
30 % 136 510 40
Entity #50 | Chains: B2,D2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 170 140
95 % 23 170 185
90 % 23 170 198
70 % 23 199 169
50 % 92 409 55
40 % 92 409 68
30 % 92 409 74
Entity #51 | Chains: B3,D3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 167 142
95 % 23 167 189
90 % 23 167 203
70 % 23 167 223
50 % 23 188 208
40 % 93 421 66
30 % 93 421 68
Entity #52 | Chains: B4,D4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 165 150
95 % 22 165 200
90 % 22 165 214
70 % 22 165 233
50 % 69 371 81
40 % 69 371 97
30 % 69 371 96
Entity #53 | Chains: CA
16S rRNA rna, length: 1530 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CG
30S ribosomal protein S7 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 86 327
95 % 24 163 208
90 % 24 163 221
70 % 20 95 459
50 % 135 448 54
40 % 135 454 60
30 % 135 454 62
Entity #55 | Chains: CM
30S ribosomal protein S13 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 169 144
95 % 25 169 194
90 % 25 169 209
70 % 25 169 227
50 % 137 517 25
40 % 137 517 33
30 % 137 517 37
Entity #56 | Chains: CP
30S ribosomal protein S16 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 166 153
95 % 25 166 203
90 % 25 166 217
70 % 25 166 236
50 % 25 166 244
40 % 25 166 253
30 % 25 166 267
Entity #57 | Chains: DB
5S rRNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #58 | Chains: DF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 178 128
95 % 25 178 170
90 % 25 178 182
70 % 25 178 203
50 % 98 429 52
40 % 98 429 59
30 % 98 429 61
Entity #6 | Chains: AF,CF
30S ribosomal protein S6 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 88 304
95 % 19 86 425
90 % 19 86 454
70 % 19 88 473
50 % 19 88 511
40 % 19 88 554
30 % 19 88 575
Entity #7 | Chains: AG
30S ribosomal protein S7 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 86 327
95 % 25 163 208
90 % 25 163 221
70 % 21 95 459
50 % 136 448 54
40 % 136 454 60
30 % 136 454 62
Entity #8 | Chains: AH,CH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 166 143
95 % 24 166 192
90 % 24 166 207
70 % 24 166 225
50 % 138 519 22
40 % 138 525 27
30 % 153 686 26
Entity #9 | Chains: AI,CI
30S ribosomal protein S9 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 165 147
95 % 23 165 196
90 % 23 165 211
70 % 23 165 229
50 % 135 504 30
40 % 135 504 38
30 % 135 504 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures