4V6M

Structure of the ribosome-SecYE complex in the membrane environment


Sequence Similarity Clusters for the Entities in PDB 4V6M

Entity #1 | Chains: AA
16S RIBOSOMAL RNA rna, length: 1542 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AF
30S ribosomal protein S6 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 75 393
95 % 70 77 512
90 % 70 77 537
70 % 70 77 567
50 % 70 77 596
40 % 70 77 629
30 % 70 77 664
Entity #11 | Chains: AG
30S ribosomal protein S7 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 68 418
95 % 161 170 208
90 % 161 170 221
70 % 61 68 632
50 % 61 68 673
40 % 61 68 699
30 % 61 68 743
Entity #12 | Chains: AH
30S ribosomal protein S8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 174 144
95 % 162 174 188
90 % 162 174 199
70 % 162 174 218
50 % 506 529 20
40 % 511 535 27
30 % 511 535 33
Entity #13 | Chains: AI
30S ribosomal protein S9 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 172 151
95 % 160 172 196
90 % 160 172 208
70 % 160 172 229
50 % 492 513 29
40 % 492 513 38
30 % 492 513 42
Entity #14 | Chains: AJ
30S ribosomal protein S10 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 175 143
95 % 165 176 187
90 % 165 176 198
70 % 165 176 215
50 % 505 524 23
40 % 505 524 33
30 % 538 557 31
Entity #15 | Chains: AK
30S ribosomal protein S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 172 152
95 % 160 172 199
90 % 160 172 209
70 % 160 172 230
50 % 500 522 25
40 % 500 522 36
30 % 500 522 40
Entity #16 | Chains: AL
30S ribosomal protein S12 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 134 148 175
95 % 160 174 195
90 % 160 174 206
70 % 494 525 15
50 % 509 540 18
40 % 509 540 26
30 % 509 540 32
Entity #17 | Chains: AM
30S ribosomal protein S13 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 176 149
95 % 163 176 193
90 % 163 176 204
70 % 163 176 224
50 % 503 526 24
40 % 503 526 34
30 % 503 526 38
Entity #18 | Chains: AN
30S ribosomal protein S14 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 133 140 174
95 % 160 169 204
90 % 160 169 217
70 % 160 169 238
50 % 162 171 237
40 % 167 177 243
30 % 168 178 258
Entity #19 | Chains: AO
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 33 1183
95 % 162 175 189
90 % 162 175 200
70 % 162 175 219
50 % 510 536 19
40 % 510 536 28
30 % 510 536 34
Entity #2 | Chains: AX
mRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: AP
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 174 153
95 % 162 174 200
90 % 162 174 210
70 % 162 174 234
50 % 162 174 241
40 % 162 174 258
30 % 162 174 276
Entity #21 | Chains: AQ
30S ribosomal protein S17 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 173 147
95 % 161 173 192
90 % 161 173 203
70 % 161 173 223
50 % 173 188 214
40 % 173 188 228
30 % 173 188 238
Entity #22 | Chains: AR
30S ribosomal protein S18 protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 119 222
95 % 114 123 289
90 % 114 123 305
70 % 114 123 350
50 % 114 123 420
40 % 114 123 436
30 % 114 123 456
Entity #23 | Chains: AS
30S ribosomal protein S19 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 170 155
95 % 159 170 202
90 % 159 170 214
70 % 161 172 226
50 % 507 529 21
40 % 507 529 31
30 % 507 529 36
Entity #24 | Chains: AT
30S ribosomal protein S20 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 172 150
95 % 161 172 198
90 % 161 172 207
70 % 161 172 227
50 % 161 172 235
40 % 182 193 223
30 % 182 193 235
Entity #25 | Chains: AU
30S ribosomal protein S21 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 118 223
95 % 113 118 301
90 % 113 118 315
70 % 113 118 357
50 % 113 118 428
40 % 113 118 447
30 % 113 118 469
Entity #26 | Chains: B7
5S RIBOSOMAL RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #27 | Chains: B8
23S RIBOSOMAL RNA rna, length: 2904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #28 | Chains: BA
Preprotein translocase secY subunit protein, length: 435 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 15750
95 % 7 7 12112
90 % 7 9 7447
70 % 7 7 11594
50 % 7 7 10627
40 % 15 17 3466
30 % 15 17 3474
Entity #29 | Chains: BB
Preprotein translocase secE subunit protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 11896
95 % 4 6 9611
90 % 4 6 9560
70 % 4 6 9422
50 % 4 6 8781
40 % 4 6 8402
30 % 4 6 7818
Entity #3 | Chains: AV
FtsQ nascent chain rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: B5
50S ribosomal protein L1 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 52 891
95 % 44 52 1176
90 % 44 52 1251
70 % 44 52 1261
50 % 144 159 272
40 % 144 159 289
30 % 144 159 308
Entity #31 | Chains: B6
50S ribosomal protein L2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 178 140
95 % 166 178 183
90 % 166 178 193
70 % 166 178 212
50 % 425 441 51
40 % 425 441 60
30 % 425 441 62
Entity #32 | Chains: BD
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 190 123
95 % 175 190 159
90 % 175 190 170
70 % 175 190 191
50 % 429 447 52
40 % 433 451 56
30 % 433 452 59
Entity #33 | Chains: BE
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 181 132
95 % 167 181 169
90 % 167 181 181
70 % 167 181 202
50 % 167 181 222
40 % 415 432 66
30 % 416 433 68
Entity #34 | Chains: BF
50S ribosomal protein L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 185 126
95 % 169 185 164
90 % 169 185 175
70 % 169 185 194
50 % 419 438 53
40 % 419 438 61
30 % 419 438 63
Entity #35 | Chains: BG
50S ribosomal protein L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 180 133
95 % 166 180 173
90 % 166 180 185
70 % 166 180 205
50 % 166 180 224
40 % 207 226 201
30 % 426 448 56
Entity #36 | Chains: BH
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 149 163 163
95 % 150 164 212
90 % 150 164 224
70 % 150 164 247
50 % 150 164 279
40 % 331 348 97
30 % 334 351 94
Entity #37 | Chains: BI
50S ribosomal protein L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 163 159
95 % 146 163 211
90 % 146 163 223
70 % 146 163 244
50 % 218 259 155
40 % 218 259 168
30 % 222 267 169
Entity #38 | Chains: BJ
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 182 127
95 % 167 182 161
90 % 167 182 173
70 % 167 182 195
50 % 201 216 193
40 % 396 414 71
30 % 396 414 77
Entity #39 | Chains: BK
50S ribosomal protein L14 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 183 122
95 % 167 183 158
90 % 167 183 169
70 % 167 183 190
50 % 430 454 44
40 % 430 454 52
30 % 430 454 53
Entity #4 | Chains: AZ
Cell division protein FtsQ protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62472
95 % 1 1 45123
90 % 1 1 43568
70 % 1 1 38466
50 % 1 1 33340
40 % 1 1 29644
30 % 1 1 26612
Entity #40 | Chains: BL
50S ribosomal protein L15 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 182 128
95 % 167 182 165
90 % 167 182 176
70 % 167 182 196
50 % 167 182 221
40 % 418 436 63
30 % 418 436 66
Entity #41 | Chains: BM
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 156 170 158
95 % 164 178 182
90 % 164 178 192
70 % 164 178 211
50 % 423 442 48
40 % 423 442 58
30 % 423 442 60
Entity #42 | Chains: BN
50S ribosomal protein L17 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 178 138
95 % 167 181 166
90 % 167 181 178
70 % 167 181 197
50 % 390 407 57
40 % 421 438 55
30 % 421 440 57
Entity #43 | Chains: BO
50S ribosomal protein L18 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 165 179 136
95 % 165 179 175
90 % 165 179 187
70 % 165 179 207
50 % 405 422 58
40 % 405 422 72
30 % 405 422 78
Entity #44 | Chains: BP
50S ribosomal protein L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 181 129
95 % 167 181 167
90 % 167 181 179
70 % 167 181 199
50 % 208 222 188
40 % 208 222 200
30 % 208 222 210
Entity #45 | Chains: BQ
50S ribosomal protein L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 182 125
95 % 167 182 162
90 % 167 182 174
70 % 167 182 193
50 % 423 441 47
40 % 430 449 53
30 % 430 449 54
Entity #46 | Chains: BR
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 178 141
95 % 167 178 184
90 % 167 178 194
70 % 167 178 213
50 % 167 178 229
40 % 422 436 64
30 % 422 436 65
Entity #47 | Chains: BS
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 181 131
95 % 167 181 168
90 % 167 181 180
70 % 167 181 200
50 % 391 410 60
40 % 391 410 74
30 % 391 410 79
Entity #48 | Chains: BT
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 185 120
95 % 169 185 156
90 % 169 185 167
70 % 169 185 187
50 % 169 185 219
40 % 169 185 234
30 % 169 185 245
Entity #49 | Chains: BU
50S ribosomal protein L24 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 184 121
95 % 169 184 157
90 % 169 184 168
70 % 169 184 189
50 % 396 414 59
40 % 396 414 73
30 % 396 416 76
Entity #5 | Chains: A0,A1
Apolipoprotein A-I protein, length: 200 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 3345
95 % 8 8 4076
90 % 8 8 4073
70 % 10 10 3336
50 % 10 10 3284
40 % 10 10 3281
30 % 10 10 3212
Entity #50 | Chains: BV
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 185 118
95 % 166 185 154
90 % 166 185 165
70 % 166 185 188
50 % 167 186 211
40 % 167 186 226
30 % 167 186 237
Entity #51 | Chains: BW
50S ribosomal protein L27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 180 135
95 % 167 181 172
90 % 167 181 183
70 % 196 210 168
50 % 422 439 49
40 % 422 439 59
30 % 422 439 61
Entity #52 | Chains: BX
50S ribosomal protein L28 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 165 157
95 % 160 165 209
90 % 160 165 222
70 % 160 165 243
50 % 162 167 260
40 % 162 167 277
30 % 162 167 299
Entity #53 | Chains: BY
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 185 119
95 % 169 185 155
90 % 169 185 166
70 % 169 185 186
50 % 169 185 218
40 % 356 375 88
30 % 382 401 80
Entity #54 | Chains: BZ
50S ribosomal protein L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 182 124
95 % 167 182 163
90 % 167 182 172
70 % 167 182 192
50 % 214 229 181
40 % 412 432 65
30 % 412 432 67
Entity #55 | Chains: B0
50S ribosomal protein L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 179 137
95 % 167 179 176
90 % 167 179 188
70 % 167 179 208
50 % 167 179 227
40 % 191 203 215
30 % 413 428 71
Entity #56 | Chains: B1
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 178 139
95 % 164 178 179
90 % 164 178 195
70 % 164 178 210
50 % 189 203 199
40 % 383 400 84
30 % 383 400 86
Entity #57 | Chains: B2
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 177 142
95 % 167 177 186
90 % 167 177 197
70 % 196 206 169
50 % 405 418 56
40 % 405 418 70
30 % 405 418 75
Entity #58 | Chains: B3
50S ribosomal protein L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 174 146
95 % 164 174 190
90 % 164 174 201
70 % 164 174 221
50 % 185 195 207
40 % 185 195 220
30 % 185 195 231
Entity #59 | Chains: B4
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 172 154
95 % 160 172 201
90 % 160 172 212
70 % 160 172 233
50 % 361 378 81
40 % 361 378 95
30 % 361 378 93
Entity #6 | Chains: AB
30S ribosomal protein S2 protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 159 169 156
95 % 159 169 205
90 % 159 169 218
70 % 159 169 239
50 % 496 516 28
40 % 501 522 35
30 % 501 522 39
Entity #7 | Chains: AC
30S ribosomal protein S3 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 76 391
95 % 70 77 510
90 % 70 77 536
70 % 70 77 565
50 % 336 350 85
40 % 336 350 98
30 % 336 350 101
Entity #8 | Chains: AD
30S ribosomal protein S4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 173 148
95 % 162 173 194
90 % 162 173 205
70 % 162 173 225
50 % 483 503 31
40 % 509 530 29
30 % 509 530 35
Entity #9 | Chains: AE
30S ribosomal protein S5 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 174 145
95 % 162 174 191
90 % 162 174 202
70 % 162 174 222
50 % 497 520 26
40 % 497 520 37
30 % 497 520 41

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures