Sequence Similarity Clusters for the Entities in PDB 4V6F

Entity #1 | Chains: AA
23S RIBOSOMAL RNA rna, length: 2909 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: AN,DN
50S RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 169 89
95 % 74 194 89
90 % 74 194 95
70 % 78 261 77
50 % 104 443 44
40 % 104 443 51
30 % 104 443 52
Entity #11 | Chains: AO,DO
50S RIBOSOMAL PROTEIN L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 194 65
95 % 74 194 90
90 % 74 194 96
70 % 74 194 110
50 % 74 228 111
40 % 103 425 63
30 % 103 425 64
Entity #12 | Chains: AP,DP
50S RIBOSOMAL PROTEIN L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 178 84
95 % 74 195 82
90 % 74 195 88
70 % 77 222 87
50 % 103 431 47
40 % 103 431 56
30 % 103 431 57
Entity #13 | Chains: A0,D0
50S RIBOSOMAL PROTEIN L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 199 51
95 % 75 199 76
90 % 75 199 81
70 % 75 199 96
50 % 104 396 57
40 % 104 427 53
30 % 104 429 54
Entity #14 | Chains: AQ,DQ
50S RIBOSOMAL PROTEIN L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 179 81
95 % 74 179 108
90 % 74 179 114
70 % 74 179 125
50 % 103 411 59
40 % 103 411 74
30 % 103 411 76
Entity #15 | Chains: AR,DR
50S RIBOSOMAL PROTEIN L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 175 86
95 % 74 192 97
90 % 74 192 102
70 % 71 184 122
50 % 71 184 141
40 % 71 184 157
30 % 71 184 160
Entity #16 | Chains: A1,D1
50S RIBOSOMAL PROTEIN L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 189 74
95 % 74 194 93
90 % 74 194 99
70 % 74 194 112
50 % 104 430 46
40 % 104 438 52
30 % 104 438 53
Entity #17 | Chains: A2,D2
50S RIBOSOMAL PROTEIN L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 194 68
95 % 74 194 96
90 % 74 194 93
70 % 74 194 114
50 % 77 246 105
40 % 103 425 61
30 % 103 425 62
Entity #18 | Chains: AS,DS
50S RIBOSOMAL PROTEIN L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 202 55
95 % 76 203 78
90 % 76 203 84
70 % 76 203 98
50 % 102 399 60
40 % 102 399 76
30 % 102 399 77
Entity #19 | Chains: AT,DT
50S RIBOSOMAL PROTEIN L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 195 59
95 % 74 195 84
90 % 74 195 90
70 % 74 195 105
50 % 77 221 116
40 % 77 255 122
30 % 77 255 132
Entity #2 | Chains: AB,DB
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: AU,DU
50S RIBOSOMAL PROTEIN L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 194 69
95 % 74 194 95
90 % 74 194 101
70 % 74 194 113
50 % 100 403 58
40 % 100 403 73
30 % 100 405 74
Entity #21 | Chains: AV,DV
50S RIBOSOMAL PROTEIN L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 194 70
95 % 76 195 83
90 % 76 195 89
70 % 76 195 104
50 % 76 195 133
40 % 76 195 149
30 % 76 207 148
Entity #22 | Chains: A3,D3
50S RIBOSOMAL PROTEIN L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 176 85
95 % 75 195 81
90 % 75 195 87
70 % 75 195 103
50 % 105 428 48
40 % 105 428 57
30 % 105 428 58
Entity #23 | Chains: AZ,DZ
50S RIBOSOMAL PROTEIN L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 165 92
95 % 74 186 101
90 % 74 186 106
70 % 74 186 117
50 % 74 186 138
40 % 74 186 155
30 % 74 186 158
Entity #24 | Chains: AW,DW
50S RIBOSOMAL PROTEIN L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 179 77
95 % 74 187 104
90 % 74 187 108
70 % 74 187 121
50 % 74 187 139
40 % 100 364 88
30 % 103 390 81
Entity #25 | Chains: AX,DX
50S RIBOSOMAL PROTEIN L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 201 54
95 % 75 201 79
90 % 75 201 85
70 % 75 201 100
50 % 75 201 127
40 % 104 421 65
30 % 104 421 65
Entity #26 | Chains: A4,D4
50S RIBOSOMAL PROTEIN L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 177 90
95 % 74 177 117
90 % 74 177 121
70 % 74 177 132
50 % 74 193 146
40 % 74 264 128
30 % 74 265 137
Entity #27 | Chains: A5,D5
50S RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 178 82
95 % 74 189 102
90 % 74 189 107
70 % 74 189 119
50 % 77 246 107
40 % 103 417 68
30 % 103 417 70
Entity #28 | Chains: A6,D6
50S RIBOSOMAL PROTEIN L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 174 88
95 % 59 175 115
90 % 59 175 119
70 % 59 175 131
50 % 59 195 143
40 % 88 389 84
30 % 88 389 85
Entity #29 | Chains: A7,D7
50S RIBOSOMAL PROTEIN L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 194 62
95 % 74 194 91
90 % 74 194 92
70 % 74 194 108
50 % 103 407 54
40 % 103 407 69
30 % 103 407 71
Entity #3 | Chains: AD,DD
50S RIBOSOMAL PROTEIN L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 195 67
95 % 75 195 94
90 % 75 195 100
70 % 78 219 89
50 % 104 430 49
40 % 104 430 58
30 % 104 430 59
Entity #30 | Chains: A8,D8
50S RIBOSOMAL PROTEIN L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 195 61
95 % 75 195 87
90 % 75 195 91
70 % 75 195 106
50 % 78 223 115
40 % 104 419 67
30 % 104 419 68
Entity #31 | Chains: BA
16S ribosomal RNA rna, length: 1516 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: BE,CE
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 326 31
95 % 131 328 44
90 % 131 328 49
70 % 131 328 57
50 % 157 503 26
40 % 157 509 35
30 % 157 509 39
Entity #33 | Chains: BF,CF
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 271 48
95 % 114 271 72
90 % 114 271 74
70 % 114 271 84
50 % 118 348 84
40 % 118 348 99
30 % 118 348 101
Entity #34 | Chains: BG,CG
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 320 36
95 % 131 328 45
90 % 131 328 50
70 % 131 328 58
50 % 157 490 32
40 % 157 517 29
30 % 157 517 34
Entity #35 | Chains: BH,CH
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 327 30
95 % 131 327 50
90 % 131 327 54
70 % 131 327 63
50 % 158 507 25
40 % 158 507 36
30 % 158 507 40
Entity #36 | Chains: BI,CI
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 133 332 24
95 % 139 338 39
90 % 139 338 43
70 % 139 338 52
50 % 139 338 86
40 % 139 338 101
30 % 140 360 95
Entity #37 | Chains: BJ,CJ
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 331 25
95 % 132 332 43
90 % 132 332 48
70 % 132 330 56
50 % 159 445 53
40 % 159 451 62
30 % 159 451 63
Entity #38 | Chains: BK,CK
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 327 27
95 % 132 327 46
90 % 132 331 47
70 % 132 331 54
50 % 160 516 19
40 % 160 522 27
30 % 178 680 26
Entity #39 | Chains: BL,CL
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 226 63
95 % 131 327 48
90 % 131 327 52
70 % 131 327 61
50 % 157 501 28
40 % 157 501 37
30 % 157 501 41
Entity #4 | Chains: AE,DE
50S RIBOSOMAL PROTEIN L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 194 66
95 % 74 194 92
90 % 74 194 98
70 % 74 194 111
50 % 110 436 50
40 % 110 440 54
30 % 110 441 56
Entity #40 | Chains: BM,CM
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 325 33
95 % 131 326 54
90 % 131 326 58
70 % 131 326 66
50 % 158 511 22
40 % 158 511 32
30 % 158 533 30
Entity #41 | Chains: BN,CN
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 327 29
95 % 131 327 51
90 % 131 327 53
70 % 131 327 62
50 % 157 510 24
40 % 157 510 34
30 % 157 510 38
Entity #42 | Chains: BO,CO
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 240 52
95 % 131 334 41
90 % 131 334 45
70 % 158 514 15
50 % 158 529 16
40 % 158 529 25
30 % 158 529 32
Entity #43 | Chains: BP,CP
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 328 28
95 % 131 328 47
90 % 131 328 51
70 % 131 328 59
50 % 160 514 23
40 % 160 514 33
30 % 160 514 37
Entity #44 | Chains: BQ,CQ
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 326 32
95 % 131 326 53
90 % 131 326 57
70 % 131 344 50
50 % 131 344 85
40 % 131 344 100
30 % 131 344 102
Entity #45 | Chains: BR,CR
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 330 26
95 % 135 335 40
90 % 135 335 44
70 % 135 335 53
50 % 164 523 17
40 % 164 523 28
30 % 164 523 33
Entity #46 | Chains: BS,CS
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 322 34
95 % 131 327 49
90 % 131 327 55
70 % 131 327 60
50 % 131 327 87
40 % 131 327 102
30 % 131 327 104
Entity #47 | Chains: BT,CT
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 219 53
95 % 131 320 56
90 % 131 324 59
70 % 131 324 67
50 % 131 324 89
40 % 131 324 104
30 % 131 324 108
Entity #48 | Chains: BU,CU
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 217 57
95 % 115 271 71
90 % 115 271 73
70 % 115 271 83
50 % 115 271 106
40 % 115 271 126
30 % 115 271 135
Entity #49 | Chains: BV,CV
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 285 42
95 % 119 285 61
90 % 119 285 67
70 % 132 330 55
50 % 158 516 20
40 % 158 516 30
30 % 158 516 35
Entity #5 | Chains: AF,DF
50S RIBOSOMAL PROTEIN L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 179 83
95 % 75 195 86
90 % 75 195 97
70 % 75 195 107
50 % 78 224 114
40 % 78 234 133
30 % 105 422 66
Entity #50 | Chains: BW,CW
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 270 46
95 % 131 326 52
90 % 131 326 56
70 % 131 326 64
50 % 131 326 88
40 % 131 326 103
30 % 131 326 105
Entity #51 | Chains: BX,CX
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 284 43
95 % 119 284 65
90 % 119 284 70
70 % 119 284 80
50 % 119 284 101
40 % 119 284 121
30 % 119 284 130
Entity #52 | Chains: BB,BC,BD,CB,CC,CD
TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #53 | Chains: B1,C1
MRNA rna, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: CA
16S ribosomal RNA rna, length: 1515 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #55 | Chains: DA
23S RRNA rna, length: 2912 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #56 | Chains: DI,DJ
50S ribosomal protein L7/L12 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28503
95 % 1 2 24274
90 % 1 2 23518
70 % 1 2 21540
50 % 4 21 1802
40 % 4 21 1846
30 % 4 21 1875
Entity #57 | Chains: DY
50S ribosomal protein L10 protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 16 2105
95 % 7 16 2759
90 % 7 16 2769
70 % 7 16 2803
50 % 7 16 2812
40 % 7 16 2823
30 % 12 72 803
Entity #58 | Chains: DL
50S ribosomal protein L11 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 41 618
95 % 13 44 758
90 % 13 44 796
70 % 16 65 583
50 % 43 257 150
40 % 43 257 163
30 % 43 264 166
Entity #6 | Chains: AG,DG
50S RIBOSOMAL PROTEIN L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 180 80
95 % 77 197 80
90 % 77 197 86
70 % 80 221 85
50 % 110 427 51
40 % 110 427 59
30 % 110 427 60
Entity #7 | Chains: AH,DH
50S RIBOSOMAL PROTEIN L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 194 64
95 % 74 194 88
90 % 74 194 94
70 % 74 194 109
50 % 75 240 108
40 % 104 433 55
30 % 104 437 55
Entity #8 | Chains: AK,DK
50S RIBOSOMAL PROTEIN L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 138 103
95 % 66 160 122
90 % 66 160 127
70 % 66 160 139
50 % 66 165 158
40 % 91 338 96
30 % 91 341 96
Entity #9 | Chains: AM,DM
50S RIBOSOMAL PROTEIN L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 190 73
95 % 74 191 100
90 % 74 191 104
70 % 74 191 116
50 % 75 196 132
40 % 101 403 72
30 % 101 403 73

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures