Sequence Similarity Clusters for the Entities in PDB 4V4J

Entity #1 | Chains: w
23S LARGE SUBUNIT RIBOSOMAL RNA rna, length: 2889 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84833
95 % 174 196 101
90 % 174 196 107
70 % 174 196 118
50 % 176 201 128
40 % 228 434 70
30 % 228 434 75
Entity #11 | Chains: I
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 1218
95 % 176 199 95
90 % 176 199 101
70 % 205 273 80
50 % 250 474 44
40 % 250 474 49
30 % 250 474 52
Entity #12 | Chains: J
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 199 69
95 % 176 199 96
90 % 176 199 104
70 % 176 199 111
50 % 183 240 113
40 % 249 456 60
30 % 249 456 62
Entity #13 | Chains: K
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 1625
95 % 176 200 87
90 % 176 200 93
70 % 200 227 92
50 % 252 459 49
40 % 252 459 58
30 % 252 459 60
Entity #14 | Chains: L
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 204 54
95 % 177 204 79
90 % 177 204 84
70 % 177 204 97
50 % 243 420 58
40 % 250 458 53
30 % 250 460 55
Entity #15 | Chains: M
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 164 184 83
95 % 164 184 111
90 % 164 184 118
70 % 164 184 127
50 % 237 441 57
40 % 237 441 72
30 % 237 441 77
Entity #16 | Chains: N
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 1595
95 % 176 197 100
90 % 176 197 106
70 % 170 189 125
50 % 170 189 146
40 % 170 189 161
30 % 170 189 162
Entity #17 | Chains: O
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 194 75
95 % 176 199 98
90 % 176 199 103
70 % 176 199 113
50 % 250 461 46
40 % 250 469 51
30 % 250 469 53
Entity #18 | Chains: P
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 199 62
95 % 176 199 90
90 % 176 199 96
70 % 176 199 107
50 % 204 258 105
40 % 249 456 61
30 % 249 456 63
Entity #19 | Chains: Q
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 207 58
95 % 179 208 80
90 % 179 208 85
70 % 179 208 98
50 % 231 430 59
40 % 231 430 73
30 % 231 430 78
Entity #2 | Chains: x
5S LARGE SUBUNIT RIBOSOMAL RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 200 61
95 % 176 200 88
90 % 176 200 94
70 % 176 200 105
50 % 199 226 120
40 % 251 462 56
30 % 251 462 58
Entity #21 | Chains: S
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 199 64
95 % 176 199 91
90 % 176 199 102
70 % 176 199 112
50 % 228 434 56
40 % 228 434 71
30 % 228 436 76
Entity #22 | Chains: T
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 199 72
95 % 178 200 86
90 % 178 200 92
70 % 178 200 104
50 % 178 200 132
40 % 178 200 150
30 % 185 212 150
Entity #23 | Chains: U
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 2766
95 % 177 200 83
90 % 177 200 88
70 % 177 200 101
50 % 252 454 51
40 % 252 454 62
30 % 252 454 64
Entity #24 | Chains: V
LSU ribosomal protein L28P protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 21 1225
95 % 175 191 102
90 % 175 191 109
70 % 175 191 119
50 % 175 191 139
40 % 175 191 156
30 % 175 191 159
Entity #25 | Chains: W
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 184 79
95 % 171 192 106
90 % 171 192 114
70 % 171 192 123
50 % 171 192 143
40 % 216 388 87
30 % 239 414 83
Entity #26 | Chains: X
LSU ribosomal protein L30P protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 206 57
95 % 177 206 81
90 % 177 206 86
70 % 177 206 99
50 % 177 206 127
40 % 250 451 65
30 % 250 451 68
Entity #27 | Chains: Y
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 3058
95 % 171 194 103
90 % 171 194 111
70 % 171 194 120
50 % 198 228 121
40 % 198 228 140
30 % 250 448 72
Entity #28 | Chains: Z
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 199 66
95 % 176 199 93
90 % 176 199 98
70 % 176 199 109
50 % 249 455 52
40 % 249 455 63
30 % 249 455 65
Entity #29 | Chains: a
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 200 70
95 % 177 200 99
90 % 177 200 105
70 % 177 200 114
50 % 198 228 119
40 % 250 444 67
30 % 250 444 71
Entity #3 | Chains: A
50S ribosomal protein L1 protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 34 1022
95 % 79 101 288
90 % 79 101 302
70 % 79 101 350
50 % 82 164 277
40 % 82 164 288
30 % 82 164 313
Entity #30 | Chains: b
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 147 110
95 % 123 147 142
90 % 123 147 149
70 % 142 209 132
50 % 186 395 79
40 % 186 395 95
30 % 186 395 94
Entity #31 | Chains: y
16S RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: z
P-site tRNAfMET rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #33 | Chains: 2
E-site tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #34 | Chains: 3
MRNA rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #35 | Chains: c
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 287 332 30
95 % 288 334 47
90 % 288 334 52
70 % 288 334 61
50 % 333 530 29
40 % 333 536 34
30 % 333 536 38
Entity #36 | Chains: d
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 246 277 49
95 % 246 277 72
90 % 246 277 77
70 % 246 277 85
50 % 267 357 86
40 % 267 357 102
30 % 267 357 103
Entity #37 | Chains: e
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 286 326 36
95 % 289 334 46
90 % 289 334 51
70 % 289 334 60
50 % 334 515 31
40 % 334 544 30
30 % 334 544 35
Entity #38 | Chains: f
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 289 333 32
95 % 289 333 50
90 % 289 333 54
70 % 289 333 63
50 % 335 534 27
40 % 335 534 36
30 % 335 534 40
Entity #39 | Chains: g
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 291 338 25
95 % 297 344 38
90 % 297 344 43
70 % 297 344 52
50 % 297 344 89
40 % 297 344 104
30 % 298 371 97
Entity #4 | Chains: B
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 200 67
95 % 177 200 97
90 % 177 200 99
70 % 198 224 93
50 % 250 461 48
40 % 250 461 57
30 % 250 461 59
Entity #40 | Chains: h
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 290 337 26
95 % 290 338 45
90 % 290 338 50
70 % 290 336 59
50 % 320 471 54
40 % 320 477 66
30 % 320 477 69
Entity #41 | Chains: i
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 286 333 28
95 % 286 333 49
90 % 290 337 49
70 % 290 337 57
50 % 337 543 22
40 % 337 549 28
30 % 379 739 23
Entity #42 | Chains: j
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 101 238
95 % 288 333 51
90 % 288 333 55
70 % 288 333 64
50 % 333 527 30
40 % 333 527 38
30 % 333 527 42
Entity #43 | Chains: k
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 287 331 34
95 % 288 332 54
90 % 288 332 58
70 % 288 332 67
50 % 335 538 24
40 % 335 538 32
30 % 335 571 31
Entity #44 | Chains: l
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 333 31
95 % 288 333 52
90 % 288 333 56
70 % 288 333 65
50 % 333 533 28
40 % 333 533 37
30 % 333 533 41
Entity #45 | Chains: m
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 244 55
95 % 288 340 44
90 % 288 340 48
70 % 334 537 15
50 % 334 554 20
40 % 334 554 27
30 % 334 554 33
Entity #46 | Chains: n
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 334 29
95 % 288 334 48
90 % 288 334 53
70 % 288 334 62
50 % 336 538 26
40 % 336 541 33
30 % 336 541 37
Entity #47 | Chains: o
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 332 33
95 % 288 332 55
90 % 288 332 59
70 % 288 339 56
50 % 288 352 87
40 % 288 352 103
30 % 288 352 105
Entity #48 | Chains: p
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 336 27
95 % 293 341 43
90 % 293 341 46
70 % 293 341 55
50 % 341 550 21
40 % 341 550 29
30 % 341 550 34
Entity #49 | Chains: q
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 288 328 35
95 % 288 333 53
90 % 288 333 57
70 % 288 333 66
50 % 288 333 92
40 % 288 333 107
30 % 288 333 109
Entity #5 | Chains: C
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 199 65
95 % 176 199 92
90 % 176 199 97
70 % 176 199 108
50 % 259 467 47
40 % 259 471 54
30 % 259 472 56
Entity #50 | Chains: r
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 101 308
95 % 282 326 57
90 % 286 330 61
70 % 286 330 69
50 % 286 330 94
40 % 286 330 110
30 % 286 330 112
Entity #51 | Chains: s
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 206 223 59
95 % 247 277 71
90 % 247 277 76
70 % 247 277 84
50 % 247 277 109
40 % 247 277 128
30 % 247 277 138
Entity #52 | Chains: t
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 255 291 45
95 % 255 291 64
90 % 255 291 71
70 % 290 336 58
50 % 335 540 23
40 % 335 540 31
30 % 335 540 36
Entity #53 | Chains: u
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 56 547
95 % 288 332 56
90 % 288 332 60
70 % 288 332 68
50 % 288 332 93
40 % 288 332 108
30 % 288 332 110
Entity #54 | Chains: v
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 254 290 46
95 % 254 290 66
90 % 254 290 73
70 % 254 290 82
50 % 254 290 104
40 % 254 290 124
30 % 254 290 131
Entity #6 | Chains: D
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 16 1732
95 % 177 200 94
90 % 177 200 100
70 % 177 200 110
50 % 203 229 118
40 % 203 239 134
30 % 256 453 67
Entity #7 | Chains: E
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 17 1604
95 % 179 202 82
90 % 179 202 87
70 % 200 226 91
50 % 256 456 50
40 % 256 456 59
30 % 256 456 61
Entity #8 | Chains: F
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 199 63
95 % 176 199 89
90 % 176 199 95
70 % 176 199 106
50 % 195 231 115
40 % 248 462 55
30 % 248 462 57
Entity #9 | Chains: G
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 18 1557
95 % 153 165 126
90 % 153 165 131
70 % 153 165 140
50 % 158 170 161
40 % 200 349 98
30 % 200 362 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures