Sequence Similarity Clusters for the Entities in PDB 4V0U

Entity #1 | Chains: A,B,C,L,M
ACTIN, ALPHA SKELETAL MUSCLE protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 98 157 7
95 % 102 168 14 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.9
PDBFlex
90 % 137 219 9
70 % 158 244 13
50 % 158 251 16
40 % 178 271 22
30 % 199 292 28
Entity #2 | Chains: D,F,H,J,N
SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 15 2193
95 % 45 45 632 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 46 46 655
70 % 43 43 740
50 % 45 45 745
40 % 45 45 781
30 % 45 45 818
Entity #3 | Chains: E,G,I,K,O
PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 15B protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18347
95 % 1 1 17096 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.0
PDBFlex
90 % 1 1 16775
70 % 1 1 15720
50 % 1 1 14179
40 % 1 1 13195
30 % 1 1 12018

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures