Sequence Similarity Clusters for the Entities in PDB 4UN4

Entity #1 | Chains: A
SGRNA rna, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1 protein, length: 1372 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 16772
95 % 6 23 2285 Flexibility: High
Max RMSD: 32.8, Avg RMSD: 12.8
PDBFlex
90 % 6 23 2346
70 % 6 23 2348
50 % 6 23 2330
40 % 6 23 2303
30 % 6 23 2161
Entity #3 | Chains: C
TARGET DNA STRAND PROXIMAL FRAGMENT dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
NON-TARGET DNA STRAND dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
TARGET DNA STRAND DISTAL FRAGMENT dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures