Sequence Similarity Clusters for the Entities in PDB 4UMN

Entity #1 | Chains: A,B
E3 UBIQUITIN-PROTEIN LIGASE MDM2 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24567
95 % 6 10 3402 Flexibility: Low
Max RMSD: 5.9, Avg RMSD: 1.4
PDBFlex
90 % 8 14 2102
70 % 45 72 355
50 % 45 72 420
40 % 45 72 439
30 % 45 72 454
Entity #2 | Chains: C,D
M06 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures