Sequence Similarity Clusters for the Entities in PDB 4UEL

Entity #1 | Chains: A
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 9053
95 % 2 8 7697 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 4.7
PDBFlex
90 % 2 8 7669
70 % 2 8 7452
50 % 2 8 7012
40 % 2 8 6785
30 % 2 11 4810
Entity #2 | Chains: B
POLYUBIQUITIN-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 388 4
95 % 180 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 186 499 6
70 % 207 549 9
50 % 210 564 11
40 % 210 568 14
30 % 215 584 19
Entity #3 | Chains: C
PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 58144
95 % 1 2 36253 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 40849
70 % 1 2 35941
50 % 1 2 26995
40 % 1 2 28261
30 % 1 2 25023

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4UEL 3 C PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 DEUBAD DOMAIN, RESIDUES 266-388 9606
2 4UEM 2 B PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 DEUBAD DOMAIN, RESIDUES 266-388 9606