Sequence Similarity Clusters for the Entities in PDB 4UEL

Entity #1 | Chains: A
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8677
95 % 2 8 7680 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 4.7
PDBFlex
90 % 2 8 7961
70 % 2 8 7758
50 % 2 8 7076
40 % 2 8 6799
30 % 2 11 4807
Entity #2 | Chains: B
POLYUBIQUITIN-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 388 4
95 % 180 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 186 501 6
70 % 205 544 9
50 % 210 564 11
40 % 210 568 14
30 % 216 588 19
Entity #3 | Chains: C
PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 57685
95 % 1 2 42374 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 40360
70 % 1 2 35703
50 % 1 2 30980
40 % 1 2 28100
30 % 1 2 24857

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9031
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 4GU2 1 A Ubiquitin 5759
27 3A9K 1 A Ubiquitin 10090
28 3A9K 2 B Ubiquitin 10090
29 4HK2 1 A, B, C, D Ubiquitin 9606
30 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
31 1XD3 2 B, D UBC protein 9606
32 5NLF 1 A, B, C Polyubiquitin-C 9606
33 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
34 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
35 4UN2 1 A UBIQUITIN 9606
36 5VBT 1 A, B UBH04 32630
37 4PIH 1 A, B Ubiquitin 9606
38 2ZCC 1 A, B, C Ubiquitin 9913
39 6NYO 2 E Ubiquitin 4896
40 4PIJ 1 A, B Ubiquitin 9606
41 5NLI 1 A, B, C Polyubiquitin-C 9606
42 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
43 5YT6 1 A, C, E, G Ubiquitin 9606
44 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
45 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
46 4FBJ 2 B NEDD8 9606
47 3BY4 2 B Ubiquitin 9606
48 6FDK 2 B Polyubiquitin-B 9606
49 5K9P 1 A Polyubiquitin-B 9606
50 5NLJ 1 A, B, C Polyubiquitin-B 9606
51 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
52 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
53 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
54 2ZNV 2 B, E Ubiquitin 10090
55 2ZNV 3 C, F Ubiquitin 10090
56 2GBM 1 A, B, C, D Ubiquitin 9606
57 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
58 5EMZ 1 A, C, E Polyubiquitin-B 9606
59 5EMZ 2 B, D, F Polyubiquitin-B 9606
60 6B7M 2 B, C Polyubiquitin-C 9606
61 6HEI 2 B Polyubiquitin-B 9606
62 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
63 2GBN 1 A Ubiquitin 9606
64 2ZCB 1 A, B, C Ubiquitin 9606
65 5OXI 1 A, B Ubiquitin L67S mutant 9606
66 4K1R 2 B, D Polyubiquitin-C 9606
67 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
68 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
69 4I6N 2 B, D Ubiquitin 9606
70 3V6C 2 B Ubiquitin 9606
71 5AF5 1 A POLYUBIQUITIN-C 9606
72 5J8P 1 A ubiquitin 9606
73 5J8P 2 B D-ubiquitin 9606
74 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
75 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
76 6EI1 2 B Polyubiquitin-B 9606
77 6FGE 2 C Polyubiquitin-B 9606
78 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
79 3NS8 1 A, B Ubiquitin 9606
80 5GOJ 1 A Ubiquitin 9606
81 5GOJ 2 B D-ubiquitin 9606
82 6OI4 2 C, D ubiquitin 9606
83 1UBI 1 A UBIQUITIN 9606
84 2D3G 1 A, B ubiquitin 9913
85 5GOC 1 A Ubiquitin 9606
86 5GOC 2 D D-ubiquitin 9606
87 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
88 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
89 5TXK 2 B Polyubiquitin-B 9606
90 5WFI 2 C, D Ubiquitin 9606
91 1UBQ 1 A UBIQUITIN 9606
92 6B7O 2 B, C Polyubiquitin-C 9606
93 4ZFR 2 B ubiquitin unp residues 77-152 9606
94 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
95 4HJK 1 A Ubiquitin UNP residues 87-162 9606
96 6GLC 2 B Polyubiquitin-B 9606
97 3N32 1 A Ubiquitin 9606
98 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
99 3ONS 1 A Ubiquitin 9606
100 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
101 3MHS 4 D Ubiquitin 9606
102 5M93 1 A, B, C Polyubiquitin-B 9606
103 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
104 2HD5 2 B Polyubiquitin residues 1-76 9913
105 5NMC 1 A, B, C Polyubiquitin-C 9606
106 5GOI 1 A, B Ubiquitin 9606
107 5GOI 2 C, D D-ubiquitin 9606
108 1WRD 2 B Ubiquitin 9913
109 5GVI 2 B ubiquitin 10090
110 5GVI 3 C ubiquitin 10090
111 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
112 2BKR 2 B NEDDYLIN 9606
113 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
114 2FCS 1 A, B Ubiquitin residues 1-76
115 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
116 5V1Z 2 C, D Ubiquitin 9606
117 3ALB 1 A, B, C, D ubiquitin 9606
118 6GZS 2 B Polyubiquitin-B 9606
119 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
120 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
121 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
122 4PIG 1 A, B, C, D Ubiquitin 9606
123 5X3M 1 A Polyubiquitin-B 9606
124 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
125 5NL5 1 A, B, C Polyubiquitin-B 9606
126 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
127 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
128 4LDT 2 B Ubiquitin aldehyde 9606
129 4LDT 4 D Ubiquitin 9606
130 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
131 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
132 2QHO 1 A, C, E, G Ubiquitin 9913
133 3H7P 1 A Ubiquitin 9606
134 3H7P 2 B Ubiquitin 9606
135 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
136 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
137 5GO7 1 A Ubiquitin 9606
138 5GO7 2 B D-ubiquitin 9606
139 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
140 1P3Q 2 U, V Ubiquitin 9913
141 2OOB 2 B Ubiquitin 9913
142 5ULF 2 B, D Ubiquitin 9606
143 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
144 6ISU 2 B Ubiquitin 9606
145 6ISU 3 C Ubiquitin 9606
146 4F8C 2 B, D NEDD8 9606
147 5ULH 2 B Ubiquitin 9606
148 3HM3 1 A, B, C, D Ubiquitin 9606
149 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
150 5GOK 1 A Ubiquitin 9606
151 5GOK 2 B D-ubiquitin 9606
152 4WLR 3 C Polyubiquitin-B 9606
153 3WWQ 1 A, D, G, J Ubiquitin 10090
154 3WWQ 2 B, E, H, K Ubiquitin 10090
155 5JG6 2 B, C Polyubiquitin-B 9606
156 3EFU 1 A Ubiquitin 9606
157 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
158 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
159 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
160 4IG7 2 B Ubiquitin 9606
161 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
162 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
163 5WVO 1 A, B Ubiquitin 9606
164 3V6E 2 B Ubiquitin 9606
165 1UZX 2 B UBIQUITIN 9913
166 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
167 1S1Q 2 B, D ubiquitin 9606
168 6NYA 2 B, E Ubiquitin residues 77-152 4565
169 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
170 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
171 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
172 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
173 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
174 2GBR 1 A, B, C Ubiquitin 9606
175 4XKL 1 A, C Ubiquitin 9606
176 4FJV 2 B, D Polyubiquitin-C 9606
177 5DFL 1 B Ubiquitin 9606
178 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
179 5HPS 2 B Ubiquitin variant P1.1 9606
180 5GOH 1 A Ubiquitin 9606
181 5GOH 2 D D-ubiquitin 9606
182 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
183 2G45 2 B, E Ubiquitin 9606
184 6AQR 4 D Polyubiquitin-C 9606
185 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
186 5ZQ3 2 C, D Ubiquitin 9606
187 5ZQ4 2 C, D ubiquitin 9606
188 4GSW 1 A, B Ubiquitin 5759
189 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
190 1SIF 1 A ubiquitin 9606
191 5JBY 1 A, C, E ubiquitin 9606
192 5JBY 2 B, D, F D-ubiquitin 9606
193 5IFR 2 B Polyubiquitin-B 9606
194 2IBI 2 B Ubiquitin 9606
195 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
196 6D4P 2 C Ubiquitin Variant Ubv.D1.1 9606
197 6JB7 1 B Ubiquitin 9606
198 5GOG 1 A Ubiquitin 9606
199 5GOG 2 B D-ubiquitin 9606
200 2GBK 1 A, B, C, D Ubiquitin 9606
201 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
202 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
203 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
204 6DGF 2 B Polyubiquitin-B 9606
205 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
206 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
207 1XT9 2 B Neddylin 9606
208 1AAR 1 A, B DI-UBIQUITIN 9913
209 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
210 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
211 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
212 6OQ1 1 A, B Ubiquitin 9606
213 6OQ1 2 C, D Ubiquitin 9606
214 6OQ1 3 E, F Ubiquitin 9606
215 6RYA 2 B, D, F Polyubiquitin-C 9606
216 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
217 2WX0 1 A, B, E, F UBIQUITIN 9913
218 3A1Q 1 A, D Ubiquitin 10090
219 3A1Q 2 B, E Ubiquitin 10090
220 5HPL 2 C, D Ubiquitin variant R5.4 9606
221 5TR4 2 B, D Ubiquitin 9913
222 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
223 3H7S 1 A, B Ubiquitin 9606
224 3C0R 2 B, D Ubiquitin 9606
225 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
226 6PGV 2 B Polyubiquitin-B 9606
227 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
228 2C7M 2 B UBIQUITIN 9913
229 1TBE 1 A, B TETRAUBIQUITIN 9606
230 3PT2 2 B Ubiquitin B 9606
231 5VZW 2 C, D Ubiquitin 9606
232 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
233 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
234 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
235 5GO8 1 A ubiquitin 9606
236 5GO8 2 B D-ubiquitin 9606
237 3A33 2 B Ubiquitin 9606
238 3VHT 3 C Ubiquitin 10090
239 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
240 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
241 6ASR 1 A, C Ubiquitin residues 1-76 9606
242 2FCN 1 A, B Ubiquitin residues 1-76
243 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
244 4DHJ 3 D, H Ubiquitin 9606
245 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
246 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
247 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
248 4NQL 2 B Ubiquitin 10090
249 4NQL 3 C Ubiquitin 10090
250 6NJG 2 C Polyubiquitin-B 9606
251 1NBF 2 C, D Ubiquitin aldehyde 9606
252 2O6V 1 A, C, E, G Ubiquitin 9606
253 2O6V 2 B, F Ubiquitin 9606
254 2O6V 3 D, H Ubiquitin 9606
255 3OFI 2 C, D Ubiquitin 9606
256 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
257 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
258 5JBV 1 A Ubiquitin 9606
259 5JBV 2 B D-ubiquitin 9606
260 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
261 5X3O 2 D D-ubiquitin 9606
262 5ULK 2 B Ubiquitin 9606
263 5ZQ5 2 B, D Ubiquitin 9606
264 6FX4 2 B, D Polyubiquitin-B 9606
265 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
266 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
267 6D68 2 C, D Ubv.G1.1 9606
268 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
269 3IFW 2 B Ubiquitin 9606
270 3N3K 2 B Ubiquitin 9606
271 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
272 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
273 2FCM 1 A, B Ubiquitin residues 1-76
274 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
275 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
276 5HPK 2 B Ubiquitin variant NL.1 9606
277 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
278 3I3T 2 B, D, F, H Ubiquitin 9606
279 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
280 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
281 5OHK 2 B Polyubiquitin-B 9606
282 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
283 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
284 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
285 4HCP 2 B NEDD8 unp residues 1-76 9606
286 3O65 2 B, D, F, H Ubiquitin 9606
287 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
288 6IF1 2 C, D Ubiquitin 9606
289 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
290 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
291 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
292 5XPK 1 A Ubiquitin 9606
293 5XPK 2 B D-ubiquitin 9606
294 5XDP 1 B D-ubiquitin 9606
295 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
296 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
297 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
298 5OHV 1 A, C Ubiquitin 9606
299 5KNL 2 B, E Ubiquitin 84753
300 4I6L 2 B Ubiquitin UNP residues 77-150 9606
301 5TUT 2 B Ubiquitin 9606
302 3OLM 2 D Ubiquitin 4932
303 3CMM 2 B, D Ubiquitin 559292
304 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
305 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
306 4MM3 1 A Ubiquitin UNP residues 1-76 9606
307 2FIF 1 A, C, E Ubiquitin 9913
308 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
309 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
310 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
311 2XBB 2 C, D UBIQUITIN 9913
312 2GMI 3 C Ubiquitin 9606
313 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
314 5J26 1 B Ubiquitin Variant i53 9606
315 3DVG 3 X Ubiquitin D77 9606
316 3DVG 4 Y Ubiquitin 9606
317 1WR6 2 E, F, G, H ubiquitin 9913
318 3LDZ 1 E, F, G Ubiquitin 9913
319 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
320 6BVA 3 A, B Polyubiquitin-B 9606
321 5ZQ7 2 B, D Ubiquitin 9606
322 3RUL 1 A, B, C, D Ubiquitin 9606
323 5BNB 2 E, F, G, I Polyubiquitin-B 9606
324 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
325 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
326 4XOK 1 A, B, C Ubiquitin 9606
327 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
328 5ZQ6 2 B, D Ubiquitin 9606
329 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
330 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
331 6S53 2 D, F, J, L Polyubiquitin-C 9606
332 3DVN 3 U, X Ubiquitin D77 9606
333 3DVN 4 V, Y Ubiquitin 9606
334 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
335 1F9J 1 A, B TETRAUBIQUITIN 9606
336 6BYH 3 C, D, H Polyubiquitin-B 9606
337 2FID 1 A Ubiquitin 9913
338 5OHP 2 B, C Polyubiquitin-B 9606
339 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
340 1YD8 1 U, V UBIQUIN 9913
341 4BOZ 2 B, C, E UBIQUITIN-C 9606
342 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
343 3WXG 2 B, E Ubiquitin 10090
344 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
345 6CP2 3 C Polyubiquitin-B 9606
346 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
347 3IHP 2 C, D Ubiquitin 9606
348 6D6I 3 C, F Ubv.V1.1 9606
349 5LN1 2 U Polyubiquitin-B 9606
350 3K9P 2 B Ubiquitin 9606
351 3DBH 3 I, J, K, L NEDD8 9606
352 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
353 6JB6 1 B Ubiquitin 9606
354 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
355 3JSV 1 A Ubiquitin 9606
356 3JSV 2 B Ubiquitin 9606
357 3DBL 3 I, J, K, L NEDD8 9606
358 3TBL 2 D, E Ubiquitin 9606
359 2HTH 1 A Ubiquitin 9606
360 3KW5 2 B Ubiquitin 9606
361 6EQI 1 A Ubiquitin 9606
362 5E6J 2 B, E ubiquitin 32630
363 5E6J 3 C, F Polyubiquitin-B 32630
364 2NVU 4 I, J NEDD8 9606
365 2XK5 1 A UBIQUITIN 9606
366 2XK5 2 B UBIQUITIN 9606
367 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
368 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
369 3KVF 2 B Ubiquitin 9606
370 6FYH 2 B Polyubiquitin-B 9606
371 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
372 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
373 3H1U 1 A, B Ubiquitin 9913
374 6HEK 2 B, D Polyubiquitin-B 9606
375 5JTJ 2 B Polyubiquitin-B 9606
376 2WX1 1 A, B UBIQUITIN 9913
377 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
378 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
379 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
380 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
381 6DC6 2 B, D Ubiquitin 9606
382 4XOL 1 A, B Ubiquitin 9606
383 5JP3 2 B, D, F, H Polyubiquitin-B 9606
384 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
385 3GZN 3 I, J NEDD8 9606
386 5O44 1 A, E Ubiquitin 7370
387 5O44 2 B, C Polyubiquitin-B 9606
388 5O44 3 D, F Polyubiquitin-B 9606
389 3PHD 2 E, F, G, H Polyubiquitin 9606
390 3DBR 3 I, J, K, L NEDD8 9606
391 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
392 5ZBU 3 E Ubiquitin 9606
393 3N30 1 A, B Ubiquitin 9606
394 4P5O 5 H, K NEDD8 9606
395 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
396 3JVZ 3 X, Y Ubiquitin 9606
397 4DHZ 2 B Ubiquitin aldehyde 9606
398 4DHZ 3 E Ubiquitin 9606
399 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
400 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
401 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
402 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
403 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
404 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
405 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
406 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
407 3JW0 3 X, Y Ubiquitin 9606
408 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
409 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
410 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
411 5JTV 2 B, D, F, H Polyubiquitin-B 9606
412 5OHN 2 B, D Polyubiquitin-B 9606
413 5TTE 3 F ubiquitin unp residues 1-76 4565
414 2FCQ 1 A, B Ubiquitin residues 1-76 9031
415 3EEC 1 A, B Ubiquitin 9606
416 5VNZ 3 C, F Ubiquitin 9606
417 6H4H 2 C, D Polyubiquitin-B 9606
418 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
419 6C16 3 D, H Polyubiquitin-B 9606
420 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
421 5H7S 1 E, F Ubiquitin-like 1 9606
422 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
423 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
424 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
425 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
426 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
427 2DX5 2 B Ubiquitin 9913
428 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
429 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
430 5VO0 3 C, F Ubiquitin 9606
431 6DJW 2 B Ubiquitin 9913
432 2AYO 2 B Ubiquitin 9606
433 5KHY 1 A Polyubiquitin-B 9606
434 5KHY 2 B Polyubiquitin-B 9606
435 6DJX 2 B Ubiquitin 9913
436 4JIO 2 U Ubiquitin 9606
437 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
438 6UH5 11 Q Ubiquitin 9606
439 6KOW 1 A Polyubiquitin-B 9606
440 6KOX 1 A Polyubiquitin-B 9606
441 6KIU 11 O Ubiquitin 9606
442 6KIV 9 O Ubiquitin 9606
443 6KIW 9 O Ubiquitin 9606
444 6K4I 1 A ubiquitin 9606
445 6OQ2 1 B Ubiquitin 9606
446 6OQ2 2 D Ubiquitin 9606
447 6OQ2 3 E Ubiquitin 9606
448 6R7F 14 N NEDD8 9606
449 6R7I 9 N NEDD8 9606
450 6OB1 1 A Ubiquitin 9606
451 6OB1 2 B Ubiquitin 9606
452 6OA9 2 H, J, K Ubiquitin 4932
453 6OAA 3 H Ubiquitin 4932
454 6O96 8 L Polyubiquitin-B 9606
455 6JMA 7 Y Ubiquitin 9606
456 6J99 7 L Ubiquitin 9606
457 6NQA 7 L Ubiquitin 9606
458 6NOG 5 L Ubiquitin 9606
459 6NN6 8 L Ubiquitin 9606
460 6QF8 1 A Polyubiquitin-B 9606
461 6NJ9 5 L Ubiquitin 9606
462 6N13 2 D ubiquitin 9606
463 6N13 4 A phosphoubiquitin 9606
464 6MSB 19 u, w Ubiquitin 9606
465 6MSD 19 u, w Ubiquitin 9606
466 6MSE 19 u Ubiquitin 9606
467 6MSG 19 u Ubiquitin 9606
468 6FTX 8 N, O Polyubiquitin-B 9606
469 5ZD0 1 A ubiquitin 9606
470 5YMY 1 A Ubiquitin 9606
471 5YMY 2 B Ubiquitin 9606
472 5VZM 1 A Ubiquitin UNP residues 1-76 9606
473 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
474 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
475 5VEY 2 B Polyubiquitin-B 9606
476 5VF0 1 A Polyubiquitin-B 9606
477 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
478 5UJL 1 A, B Ubiquitin residues 1-76 9606
479 5UJN 1 A, B Ubiquitin 9606
480 5GO0 1 A Ubiquitin, putative 5691
481 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
482 5KGF 8 M, O Ubiquitin 9606
483 2NBD 1 A entity 9606
484 2NBE 1 A entity 9606
485 2N7K 1 A NEDD8 9606
486 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
487 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
488 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
489 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
490 2N2K 1 A ubiquitin 9606
491 2N2K 2 B ubiquitin 9606
492 2N13 2 B Ubiquitin 9606
493 2N13 3 C Ubiquitin 9606
494 2MWS 1 A Ubiquitin UNP residues 1-76 9606
495 2MUR 2 B Ubiquitin 9606
496 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
497 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
498 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
499 2MOR 1 A Ubiquitin UNP residues 1-76 9606
500 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
501 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
502 2MI8 1 A Ubiquitin 9606
503 2RU6 1 A Ubiquitin 9606
504 2MCN 2 B Ubiquitin UNP residues 1-76 9606
505 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
506 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
507 2MBH 2 A Ubiquitin 9606
508 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
509 2M0X 1 A engineered ubiquitin variant 9606
510 2LZ6 1 A Ubiquitin 9606
511 2LVO 1 A Ubiquitin 9606
512 2LVP 1 A, B Ubiquitin 9606
513 2LVQ 1 A, B Ubiquitin 9606
514 2RSU 1 A Ubiquitin 9606
515 2LRW 1 A Ubiquitin, putative 185431
516 2LJ5 1 A Ubiquitin 9606
517 2LD9 1 A Ubiquitin 9606
518 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
519 2L0T 1 A Ubiquitin 9606
520 2L0F 1 A Ubiquitin 9606
521 2L00 2 B Ubiquitin ubiquitin core domain 4932
522 2RR9 1 A, B ubiquitin 9606
523 2KWV 2 B Ubiquitin 9606
524 2KWU 2 B Ubiquitin 9606
525 2KTF 1 A Ubiquitin 9606
526 2KOX 1 A Ubiquitin 9606
527 2KO3 1 A NEDD8 9606
528 2KN5 1 A Ubiquitin 9606
529 2KLG 1 A Ubiquitin 9606
530 2KJH 2 B Ubiquitin 9606
531 2KHW 2 B Ubiquitin 9606
532 2KDE 2 B, C Ubiquitin 8355
533 2KDF 2 B, C Ubiquitin 9606
534 2K8B 1 A Ubiquitin 9606
535 2K8C 1 A Ubiquitin 9606
536 2K6D 2 B Ubiquitin ubiquitin 9606
537 2K39 1 A Ubiquitin 8355
538 2JZZ 1 A Ubiquitin 9606
539 2JY6 1 A Ubiquitin protein 9606
540 2JWZ 1 A Ubiquitin 4932
541 2JVC 1 A ubiquitin_like protein
542 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
543 2Z59 2 B Ubiquitin 9606
544 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
545 2PE9 1 A, B Ubiquitin 9606
546 2PEA 1 A, B Ubiquitin 9606
547 2NR2 1 A Ubiquitin 9606
548 2DZI 1 A Ubiquitin-like protein 4A ubiquitin-like domain 9606
549 2G3Q 2 B Ubiquitin 4932
550 2DEN 2 B Ubiquitin 9606
551 2FUH 2 B Ubiquitin Ubiquitin 10116
552 1ZW7 1 A Ubiquitin 4932
553 1ZGU 2 B Ubiquitin 9606
554 1WY8 1 A Np95-like ring finger protein, isoform a ubiquitin-like domain 9606 2.3.2.27 | Details
555 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
556 1XQQ 1 A ubiquitin 9606
557 1WR1 1 A Ubiquitin 4932
558 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
559 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
560 1Q5W 2 B Ubiquitin 9606
561 1Q0W 2 B Ubiquitin 4932
562 1OTR 2 B Ubiquitin 4932
563 1G6J 1 A UBIQUITIN 9606
564 1FXT 2 B UBIQUITIN 9606
565 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
566 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
567 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
568 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702