Sequence Similarity Clusters for the Entities in PDB 4UEL

Entity #1 | Chains: A
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8677
95 % 2 8 7680 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 4.7
PDBFlex
90 % 2 8 7961
70 % 2 8 7758
50 % 2 8 7076
40 % 2 8 6799
30 % 2 11 4807
Entity #2 | Chains: B
POLYUBIQUITIN-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 388 4
95 % 180 486 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 186 501 6
70 % 205 544 9
50 % 210 564 11
40 % 210 568 14
30 % 216 588 19
Entity #3 | Chains: C
PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 57685
95 % 1 2 42374 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 40360
70 % 1 2 35703
50 % 1 2 30980
40 % 1 2 28100
30 % 1 2 24857

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4WLR 1 A Ubiquitin carboxyl-terminal hydrolase isozyme L5 10090 3.4.19.12 | Details
2 4UEL 1 A UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 ACTIVE SITE CYS88 COVALENTLY LINKED TO UBIQUITIN-PROPARGYL 9606 3.4.19.12 | Details
3 4WLQ 1 A Ubiquitin carboxyl-terminal hydrolase isozyme L5 10090 3.4.19.12 | Details
4 3IHR 1 A Ubiquitin carboxyl-terminal hydrolase isozyme L5 9606 3.4.19.12 | Details
5 4WLP 1 A Ubiquitin carboxyl-terminal hydrolase isozyme L5 9606 3.4.19.12 | Details
6 4UEM 1 A UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 ISOFORM 3 9606 3.4.19.12 | Details
7 4UF6 1 A, D, G, J UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 ACTIVE SITE CYS88 COVALENTLY LINKED TO UBIQUITIN-PROPARGYL 9606 3.4.19.12 | Details
8 4UF5 1 A UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 ISOFORM 3 9606 3.4.19.12 | Details