Sequence Similarity Clusters for the Entities in PDB 4UEL

Entity #1 | Chains: A
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L5 protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 9293
95 % 2 8 8012 Flexibility: Medium
Max RMSD: 11.6, Avg RMSD: 4.7
PDBFlex
90 % 2 8 7958
70 % 2 8 7767
50 % 2 8 7323
40 % 2 8 6908
30 % 2 11 4889
Entity #2 | Chains: B
POLYUBIQUITIN-B protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 387 4
95 % 180 485 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 186 498 6
70 % 207 548 9
50 % 210 563 11
40 % 210 567 14
30 % 215 583 20
Entity #3 | Chains: C
PROTEASOMAL UBIQUITIN RECEPTOR ADRM1 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 57730
95 % 1 2 42514 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 34538
70 % 1 2 30830
50 % 1 2 31096
40 % 1 2 24482
30 % 1 2 21787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures