Sequence Similarity Clusters for the Entities in PDB 4TZO

Entity #1 | Chains: A,C,E,G
Protein HTP-1 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15539
95 % 2 2 16330 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 16071
70 % 4 6 5795
50 % 4 6 5699
40 % 4 6 5561
30 % 4 6 5309
Entity #2 | Chains: B,D,F,H
C. elegans HIM-3 closure motif protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 11700
95 % 2 3 11011
90 % 2 3 10922
70 % 2 3 10475
50 % 2 3 9704
40 % 2 3 9252
30 % 2 3 8592

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures