Sequence Similarity Clusters for the Entities in PDB 4TXQ

Entity #1 | Chains: A,B
Vacuolar protein sorting-associated protein VTA1 homolog protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8269
95 % 3 6 8838 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 6 8796
70 % 3 6 8702
50 % 3 6 8122
40 % 3 6 7790
30 % 3 6 7276
Entity #2 | Chains: C,D
Charged multivesicular body protein 1b protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29797
95 % 2 2 25233
90 % 2 2 24414
70 % 2 2 22330
50 % 2 2 19683
40 % 2 2 17992
30 % 2 2 16133

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures