Sequence Similarity Clusters for the Entities in PDB 4TUE

Entity #1 | Chains: QA,XA
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: QJ,XJ
30S ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 223 325 33
95 % 224 326 54
90 % 224 326 58
70 % 224 326 66
50 % 254 511 22
40 % 254 511 32
30 % 254 533 30
Entity #11 | Chains: QK,XK
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 327 29
95 % 224 327 51
90 % 224 327 53
70 % 224 327 62
50 % 253 510 24
40 % 253 510 34
30 % 253 510 38
Entity #12 | Chains: QL,XL
30S ribosomal protein S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 142 240 52
95 % 224 334 41
90 % 224 334 45
70 % 254 514 15
50 % 254 529 16
40 % 254 529 25
30 % 254 529 32
Entity #13 | Chains: QM,XM
30S ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 328 28
95 % 224 328 47
90 % 224 328 51
70 % 224 328 59
50 % 256 514 23
40 % 256 514 33
30 % 256 514 37
Entity #14 | Chains: QN,XN
30S ribosomal protein S14 type Z protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 326 32
95 % 224 326 53
90 % 224 326 57
70 % 224 344 50
50 % 224 344 85
40 % 224 344 100
30 % 224 344 102
Entity #15 | Chains: QO,XO
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 330 26
95 % 228 335 40
90 % 228 335 44
70 % 228 335 53
50 % 260 523 17
40 % 260 523 28
30 % 260 523 33
Entity #16 | Chains: QP,XP
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 322 34
95 % 224 327 49
90 % 224 327 55
70 % 224 327 60
50 % 224 327 87
40 % 224 327 102
30 % 224 327 104
Entity #17 | Chains: QQ,XQ
30S ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 219 53
95 % 222 320 56
90 % 223 324 59
70 % 223 324 67
50 % 223 324 89
40 % 223 324 104
30 % 223 324 108
Entity #18 | Chains: QR,XR
30S ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 217 57
95 % 195 271 71
90 % 195 271 73
70 % 195 271 83
50 % 195 271 106
40 % 195 271 126
30 % 195 271 135
Entity #19 | Chains: QS,XS
30S ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 202 285 42
95 % 202 285 61
90 % 202 285 67
70 % 225 330 55
50 % 254 516 20
40 % 254 516 30
30 % 254 516 35
Entity #2 | Chains: QB,XB
30S ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 326 31
95 % 224 328 44
90 % 224 328 49
70 % 224 328 57
50 % 253 503 26
40 % 253 509 35
30 % 253 509 39
Entity #20 | Chains: QT,XT
30S ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 270 46
95 % 224 326 52
90 % 224 326 56
70 % 224 326 64
50 % 224 326 88
40 % 224 326 103
30 % 224 326 105
Entity #21 | Chains: QU,XU
30S ribosomal protein Thx protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 204 284 43
95 % 204 284 65
90 % 204 284 70
70 % 204 284 80
50 % 204 284 101
40 % 204 284 121
30 % 204 284 130
Entity #22 | Chains: QV,XV
P-site tRNA-fMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: QX,XX
messenger RNA rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: QY,XY
A-site ASL-SufJ rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #25 | Chains: RA,YA
23S rRNA rna, length: 2915 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #26 | Chains: RB,YB
5S rRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #27 | Chains: RD,YD
50S ribosomal protein L2 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 195 67
95 % 131 195 94
90 % 131 195 100
70 % 138 219 89
50 % 173 430 49
40 % 173 430 58
30 % 173 430 59
Entity #28 | Chains: RE,YE
50S ribosomal protein L3 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 194 66
95 % 130 194 92
90 % 130 194 98
70 % 130 194 111
50 % 179 436 50
40 % 179 440 54
30 % 179 441 56
Entity #29 | Chains: RF,YF
50S ribosomal protein L4 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 179 83
95 % 131 195 86
90 % 131 195 97
70 % 131 195 107
50 % 138 224 114
40 % 138 234 133
30 % 174 422 66
Entity #3 | Chains: QC,XC
30S ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 195 271 48
95 % 195 271 72
90 % 195 271 74
70 % 195 271 84
50 % 201 348 84
40 % 201 348 99
30 % 201 348 101
Entity #30 | Chains: RG,YG
50S ribosomal protein L5 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 180 80
95 % 133 197 80
90 % 133 197 86
70 % 140 221 85
50 % 179 427 51
40 % 179 427 59
30 % 179 427 60
Entity #31 | Chains: RH,YH
50S ribosomal protein L6 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 194 64
95 % 130 194 88
90 % 130 194 94
70 % 130 194 109
50 % 137 240 108
40 % 172 433 55
30 % 172 437 55
Entity #32 | Chains: RI,YI
50S ribosomal protein L9 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 138 103
95 % 116 160 122
90 % 116 160 127
70 % 116 160 139
50 % 117 165 158
40 % 144 338 96
30 % 144 341 96
Entity #33 | Chains: RN,YN
50S ribosomal protein L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 190 73
95 % 130 191 100
90 % 130 191 104
70 % 130 191 116
50 % 131 196 132
40 % 166 403 72
30 % 166 403 73
Entity #34 | Chains: RO,YO
50S ribosomal protein L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 169 89
95 % 130 194 89
90 % 130 194 95
70 % 144 261 77
50 % 173 443 44
40 % 173 443 51
30 % 173 443 52
Entity #35 | Chains: RP,YP
50S ribosomal protein L15 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 194 65
95 % 130 194 90
90 % 130 194 96
70 % 130 194 110
50 % 136 228 111
40 % 172 425 63
30 % 172 425 64
Entity #36 | Chains: RQ,YQ
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 178 84
95 % 130 195 82
90 % 130 195 88
70 % 137 222 87
50 % 172 431 47
40 % 172 431 56
30 % 172 431 57
Entity #37 | Chains: RR,YR
50S ribosomal protein L17 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 199 51
95 % 131 199 76
90 % 131 199 81
70 % 131 199 96
50 % 167 396 57
40 % 173 427 53
30 % 173 429 54
Entity #38 | Chains: RS,YS
50S ribosomal protein L18 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 179 81
95 % 128 179 108
90 % 128 179 114
70 % 128 179 125
50 % 170 411 59
40 % 170 411 74
30 % 170 411 76
Entity #39 | Chains: RT,YT
50S ribosomal protein L19 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 175 86
95 % 130 192 97
90 % 130 192 102
70 % 124 184 122
50 % 124 184 141
40 % 124 184 157
30 % 124 184 160
Entity #4 | Chains: QD,XD
30S ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 222 320 36
95 % 224 328 45
90 % 224 328 50
70 % 224 328 58
50 % 253 490 32
40 % 253 517 29
30 % 253 517 34
Entity #40 | Chains: RU,YU
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 189 74
95 % 130 194 93
90 % 130 194 99
70 % 130 194 112
50 % 173 430 46
40 % 173 438 52
30 % 173 438 53
Entity #41 | Chains: RV,YV
50S ribosomal protein L21 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 194 68
95 % 130 194 96
90 % 130 194 93
70 % 130 194 114
50 % 143 246 105
40 % 172 425 61
30 % 172 425 62
Entity #42 | Chains: RW,YW
50S ribosomal protein L22 protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 132 202 55
95 % 133 203 78
90 % 133 203 84
70 % 133 203 98
50 % 168 399 60
40 % 168 399 76
30 % 168 399 77
Entity #43 | Chains: RX,YX
50S ribosomal protein L23 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 195 59
95 % 130 195 84
90 % 130 195 90
70 % 130 195 105
50 % 137 221 116
40 % 143 255 122
30 % 143 255 132
Entity #44 | Chains: RY,YY
50S ribosomal protein L24 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 194 69
95 % 130 194 95
90 % 130 194 101
70 % 130 194 113
50 % 165 403 58
40 % 165 403 73
30 % 165 405 74
Entity #45 | Chains: RZ,YZ
50S ribosomal protein L25 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 194 70
95 % 132 195 83
90 % 132 195 89
70 % 132 195 104
50 % 132 195 133
40 % 132 195 149
30 % 138 207 148
Entity #46 | Chains: R0,Y0
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 176 85
95 % 131 195 81
90 % 131 195 87
70 % 131 195 103
50 % 174 428 48
40 % 174 428 57
30 % 174 428 58
Entity #47 | Chains: R1,Y1
50S ribosomal protein L28 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 165 92
95 % 130 186 101
90 % 130 186 106
70 % 130 186 117
50 % 130 186 138
40 % 130 186 155
30 % 130 186 158
Entity #48 | Chains: R2,Y2
50S ribosomal protein L29 protein, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 179 77
95 % 130 187 104
90 % 130 187 108
70 % 130 187 121
50 % 130 187 139
40 % 159 364 88
30 % 166 390 81
Entity #49 | Chains: R3,Y3
50S ribosomal protein L30 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 201 54
95 % 131 201 79
90 % 131 201 85
70 % 131 201 100
50 % 131 201 127
40 % 173 421 65
30 % 173 421 65
Entity #5 | Chains: QE,XE
30S ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 327 30
95 % 224 327 50
90 % 224 327 54
70 % 224 327 63
50 % 254 507 25
40 % 254 507 36
30 % 254 507 40
Entity #50 | Chains: R4,Y4
50S ribosomal protein L31 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 177 90
95 % 128 177 117
90 % 128 177 121
70 % 128 177 132
50 % 129 193 146
40 % 129 264 128
30 % 129 265 137
Entity #51 | Chains: R5,Y5
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 178 82
95 % 130 189 102
90 % 130 189 107
70 % 130 189 119
50 % 143 246 107
40 % 172 417 68
30 % 172 417 70
Entity #52 | Chains: R6,Y6
50S ribosomal protein L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 174 88
95 % 113 175 115
90 % 113 175 119
70 % 113 175 131
50 % 113 195 143
40 % 148 389 84
30 % 148 389 85
Entity #53 | Chains: R7,Y7
50S ribosomal protein L34 protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 194 62
95 % 130 194 91
90 % 130 194 92
70 % 130 194 108
50 % 166 407 54
40 % 166 407 69
30 % 166 407 71
Entity #54 | Chains: R8,Y8
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 131 195 61
95 % 131 195 87
90 % 131 195 91
70 % 131 195 106
50 % 138 223 115
40 % 173 419 67
30 % 173 419 68
Entity #55 | Chains: R9,Y9
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 144 107
95 % 90 144 139
90 % 90 144 143
70 % 98 202 130
50 % 126 369 79
40 % 126 369 95
30 % 126 369 94
Entity #56 | Chains: Z5,Z6
CC-Puro rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: QF,XF
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 226 332 24
95 % 232 338 39
90 % 232 338 43
70 % 232 338 52
50 % 232 338 86
40 % 232 338 101
30 % 233 360 95
Entity #7 | Chains: QG,XG
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 225 331 25
95 % 225 332 43
90 % 225 332 48
70 % 225 330 56
50 % 254 445 53
40 % 254 451 62
30 % 254 451 63
Entity #8 | Chains: QH,XH
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 224 327 27
95 % 224 327 46
90 % 225 331 47
70 % 225 331 54
50 % 256 516 19
40 % 256 522 27
30 % 290 680 26
Entity #9 | Chains: QI,XI
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 226 63
95 % 224 327 48
90 % 224 327 52
70 % 224 327 61
50 % 253 501 28
40 % 253 501 37
30 % 253 501 41

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures