Sequence Similarity Clusters for the Entities in PDB 4TKP

Entity #1 | Chains: A
Ubiquitin-conjugating enzyme E2 N protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 15 1146
95 % 10 26 952 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 10 26 991
70 % 10 26 1024
50 % 10 26 1071
40 % 54 107 335
30 % 82 181 191
Entity #2 | Chains: B
Tripartite motif-containing protein 5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64816
95 % 1 1 47241
90 % 1 1 44846
70 % 1 1 39527
50 % 1 1 34167
40 % 1 1 30919
30 % 1 3 11780

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4ONM 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
2 4ONL 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
3 5YWR 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
4 4ONN 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
5 4DHI 2 D Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
6 4NR3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
7 4NRG 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
8 1J7D 2 B UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 9606 2.3.2.23 | Details
9 3HCT 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
10 4TKP 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
11 4NRI 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
12 5AIU 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 N CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F 9606 2.3.2.23 | Details
13 5EYA 1 A, B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
14 4DHJ 4 C, G, K, N Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
15 4IP3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
16 3HCU 2 B, D Ubiquitin-conjugating enzyme E2 N Ubc13 9606 2.3.2.23 | Details
17 2C2V 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
18 3W31 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
19 3VON 3 C, E, G, J, L, N, Q, S, U, X, Z, b, e, g, i, l, n, p Ubiquitin-conjugating enzyme E2 N UNP residues 3-150 9606 2.3.2.23 | Details
20 4DHZ 4 F Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
21 5AIT 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 N 9606 2.3.2.23 | Details
22 5VNZ 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
23 5H7S 3 A, C Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
24 5VO0 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
25 4ORH 2 B, F, J Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
26 4WHV 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N unp residues 1-152 9606 2.3.2.23 | Details