Sequence Similarity Clusters for the Entities in PDB 4TKP

Entity #1 | Chains: A
Ubiquitin-conjugating enzyme E2 N protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 15 1161
95 % 10 26 962 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 10 26 1003
70 % 10 26 1019
50 % 10 26 1069
40 % 54 107 326
30 % 82 181 190
Entity #2 | Chains: B
Tripartite motif-containing protein 5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64718
95 % 1 1 47199
90 % 1 1 44785
70 % 1 1 39450
50 % 1 1 34143
40 % 1 1 30879
30 % 1 3 11729

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Z2U 1 A Ubiquitin-conjugating enzyme E2 2 6239 6.3.2.19 | Details
2 5F6E 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
3 5F6Y 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
4 4ONM 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
5 2UYZ 1 A SUMO-CONJUGATING ENZYME UBC9 START METHIONINE (1) AND SECOND SERINE (2) ARE MISSING IN STRUCTURE 10090 2.3.2 | Details
6 2GRR 1 A Ubiquitin-conjugating enzyme E2 I 9606 2.3.2 | Details
7 4ONL 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
8 2ESK 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
9 5LBN 1 A Ubiquitin-conjugating enzyme E2 E1 9606 2.3.2.23 | Details
10 2ESQ 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
11 5F6V 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
12 5YWR 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
13 4M1N 1 A, B, C Ubiquitin conjugating enzyme UBC9 5833
14 2YB6 1 A UBIQUITIN-CONJUGATING ENZYME E2 B 9606 2.3.2.23 | Details
15 2ESO 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
16 5V0R 1 A Ubiquitin-conjugating enzyme 5763
17 4ONN 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
18 5F6D 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
19 2ESP 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
20 4V3L 1 A UBIQUITIN-CONJUGATING ENZYME E2 D2 K85 SIDE CHAIN IS COVALENTLY LINKED TO G76 IN CHAIN B. RESIDUES 2-147 9606 2.3.2.23 | Details
21 5F6U 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
22 5F6X 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
23 4GPR 1 A Ubiquitin-conjugating enzyme family protein 5759
24 5D1M 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
25 5D1L 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
26 3L1Y 1 A Ubiquitin-conjugating enzyme E2 D2 residues 1-147 9606 2.3.2.23 | Details
27 1JAT 1 A Ubiquitin-Conjugating Enzyme E2-17.5 KDA 4932 2.3.2.23 | Details
28 3BZH 1 A Ubiquitin-conjugating enzyme E2 E1 9606 2.3.2.23 | Details
29 6HPR 3 C Ubiquitin-conjugating enzyme E2 D2 UbcH5B residues 1-147. Cys85 is mutated to Lys and forms isopeptide linkage with ubiquitin's Gly76 in chain D. 9606 2.3.2.23 | Details
30 4L83 1 A Ube2i2 protein 6279
31 5F6W 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
32 2GRO 1 A Ubiquitin-conjugating enzyme E2 I 9606 2.3.2 | Details
33 2GRQ 1 A Ubiquitin-conjugating enzyme E2 I 9606 2.3.2 | Details
34 4JUE 1 A, B, C, D Ubiquitin conjugating enzyme UBC9 5833
35 5D1K 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
36 2BEP 1 A UBIQUITIN-CONJUGATING ENZYME E2-25 KDA CONSERVED CORE DOMAIN, RESIDUES 1-155 9913 2.3.2.23 | Details
37 3TGD 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
38 4DHI 2 D Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
39 2GRN 1 A Ubiquitin-conjugating enzyme E2 I 9606 2.3.2 | Details
40 4JQU 1 A Ubiquitin-conjugating enzyme E2 7 4932 2.3.2.23 | Details
41 4NR3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
42 2GJD 1 A, B, C, D Ubiquitin-conjugating enzyme E2-18 kDa 4932 2.3.2 | Details
43 5OJJ 1 A, B, C, D, E, F Ubiquitin-conjugating enzyme E2 T 9606 2.3.2.23 | Details
44 5EGG 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
45 3H8K 1 A Ubiquitin-conjugating enzyme E2 G2 9606 2.3.2.23 | Details
46 6MJ9 1 A Ubiquitin-conjugating enzyme 5763
47 1Y6L 1 A, B, C Ubiquitin-conjugating enzyme E2E2 Residues 55-201 9606 6.3.2.19 | Details
48 2R0J 1 A Ubiquitin carrier protein Residues 3-150 5833 6.3.2 | Details
49 5D0M 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
50 1U9A 1 A UBIQUITIN-CONJUGATING ENZYME 10090 2.3.2 | Details
51 4QPL 2 B, D Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
52 5OJW 1 A Ubiquitin-conjugating enzyme E2 13 4932 2.3.2.23 | Details
53 1X23 1 A, B, C, D Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
54 6CYO 1 A Ubiquitin-conjugating enzyme E2 A 9606 2.3.2.23 | Details
55 4NRG 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
56 4LDT 3 C Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
57 5ULF 1 A, C Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
58 1J7D 2 B UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 9606 2.3.2.23 | Details
59 3RCZ 2 B SUMO-conjugating enzyme ubc9 4896 6.3.2 | Details
60 1ZDN 1 A, B Ubiquitin-conjugating enzyme E2S N-terminal domain, residues 1-156 9606 2.3.2.23 | Details
61 5ULH 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
62 1FZY 1 A, B UBIQUITIN-CONJUGATING ENZYME E2-24 KDA 4932 2.3.2.23 | Details
63 1JBB 1 A, B ubiquitin conjugating enzyme E2-17.5 KDA 4932 2.3.2.23 | Details
64 1U9B 1 A UBIQUITIN-CONJUGATING ENZYME E9 MAMMALIAN 10090 2.3.2 | Details
65 4V3K 1 A, D UBIQUITIN-CONJUGATING ENZYME E2 D2 LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 2-147 9606 2.3.2.23 | Details
66 4S3O 1 A, D Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
67 2YBF 1 A UBIQUITIN-CONJUGATING ENZYME E2 B 9606 2.3.2.23 | Details
68 2GRP 1 A Ubiquitin-conjugating enzyme E2 I 9606 2.3.2 | Details
69 1YH2 1 A HSPC150 protein similar to ubiquitin-conjugating enzyme 9606 2.3.2.23 | Details
70 2CLW 1 A UBIQUITIN-CONJUGATING ENZYME E2 D2 RESIDUE A 85 HAS BEEN MODIFIED FROM CYSTEINE BY 2-MERCAPTOETHANOL TO FORM S, S-(2-HYDROXYETHYL) THIOCYSTEINE 9606 2.3.2.23 | Details
71 2CLW 2 B, C, D UBIQUITIN-CONJUGATING ENZYME E2 D2 9606 2.3.2.23 | Details
72 2YHO 2 B, D, F, H UBIQUITIN-CONJUGATING ENZYME E2 D1 9606 2.3.2.23 | Details
73 2EKE 1 A, B SUMO-conjugating enzyme UBC9 4932 2.3.2 | Details
74 4A49 2 B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
75 3ZNI 3 C, G, K, O UBIQUITIN-CONJUGATING ENZYME E2 D2 K85 SIDECHAIN IN CHIANS C, G, K AND O FORMS AN ISOPEPTIDE LINKAGE WITH THE CARBONYL CARBON OF G76 IN CHAINS D, H, L AND P, RESPECTIVELY. RESIDUES 2-147 9606 2.3.2.23 | Details
76 2VRR 1 A SUMO-CONJUGATING ENZYME UBC9 10090 2.3.2 | Details
77 2AYV 1 A ubiquitin-conjugating enzyme E2 5811 6.3.2.19 | Details
78 5MNJ 1 A, E Ubiquitin-conjugating enzyme E2 D2 K85 in Chains A and E form isopeptide linkage with the carbonyl carbon of G76 in Chains B and F, respectively. 9606 2.3.2.23 | Details
79 3HCT 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
80 5IFR 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
81 4AUQ 1 A, D UBIQUITIN-CONJUGATING ENZYME E2 D2 UBCH5B, RESIDUES 1-147 9606 2.3.2.23 | Details
82 4TKP 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
83 2AWF 1 A Ubiquitin-conjugating enzyme E2 G1 catalytic (UBCc) domain, residues 7-159 9606 2.3.2.23 | Details
84 6CYR 1 A Ubiquitin-conjugating enzyme E2 A 9606 2.3.2.23 | Details
85 4NRI 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
86 4AP4 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 D1 ISOPEPTIDE AMIDE LINKAGE OF C85K ON UBCH5A TO G76 OF UBIQUITIN CHAIN B LINKED TO CHAIN C (UBIQUITIN) CHAIN E LINKED TO CHAIN F (UBIQUITIN) 9606 2.3.2.23 | Details
87 5NL8 1 A Ubiquitin-conjugating enzyme E2-21 kDa 870730 2.3.2.23 | Details
88 3UIP 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
89 4II2 3 C Ubiquitin-conjugating enzyme E2 4 4896 6.3.2.19 | Details
90 5AIU 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 N CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F 9606 2.3.2.23 | Details
91 5VZW 1 A, B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
92 4R62 1 A Ubiquitin-conjugating enzyme E2 2 Rad6 4932 2.3.2.23 | Details
93 5EYA 1 A, B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
94 5FQ2 1 A SUMO-CONJUGATING ENZYME UBC9 LYSINE METHYLATION AT LYS110 9606 2.3.2 | Details
95 3A33 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
96 2BF8 1 A UBIQUITIN-CONJUGATING ENZYME E2-25 KDA COVALENT ISOPEPTIDE LINK BETWEEN E2-25K LYSINE 14 AND SUMO C-TERMINUS CONSERVED CORE DOMAIN, RESIDUES 1-154 9913 2.3.2.23 | Details
97 4DHJ 4 C, G, K, N Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
98 4IP3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
99 5D2M 1 A, D SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
100 1YRV 1 A ubiquitin-conjugating ligase MGC351130 residues 1-150 9606 6.3.2.19 | Details
101 3UGB 1 A Ubiquitin-conjugating enzyme E2 D3 unp residues 1-147 9606 2.3.2.23 | Details
102 3RZ3 1 A, B, C, D Ubiquitin-conjugating enzyme E2 R1 unp residues 7-184 9606 2.3.2.23 | Details
103 5ULK 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
104 3ONG 2 B, D SUMO-conjugating enzyme UBC9 4932 2.3.2 | Details
105 4LAD 1 A Ubiquitin-conjugating enzyme E2 G2 9606 2.3.2.23 | Details
106 4WZ3 1 A Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
107 5FER 2 B, E Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
108 2AAK 1 A UBIQUITIN CONJUGATING ENZYME 3702 6.3.2.19 | Details
109 2C4P 1 A, B UBIQUITIN-CONJUGATING ENZYME E2 D1 9606 2.3.2.23 | Details
110 2PE6 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
111 2OB4 1 A Ubiquitin-conjugating enzyme E2-32 kDa complementing Catalytic Domain: Residues 7-184 9606 2.3.2.23 | Details
112 5D0K 1 A, D, G, J Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
113 5KNL 3 C, F Ubiquitin-conjugating enzyme E2 15 4896 2.3.2.23 | Details
114 5TUT 1 A Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
115 3UIO 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
116 2Y9M 1 A UBIQUITIN-CONJUGATING ENZYME E2-21 KDA DISULPHIDE BOND BETWEEN RESIDUES 105 AND 146 UBC DOMAIN, RESIDUES 15-183 4932 2.3.2.23 | Details
117 1KPS 1 A, C Ubiquitin-like protein SUMO-1 conjugating enzyme 9606 2.3.2 | Details
118 4MDK 1 A, B, C, D Ubiquitin-conjugating enzyme E2 R1 E2 domain (UNP residues 7-184) 9606 2.3.2.23 | Details
119 4W5V 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
120 1Y8X 1 A Ubiquitin-conjugating enzyme E2 M 9606 2.3.2 | Details
121 1AYZ 1 A, B, C UBIQUITIN-CONJUGATING ENZYME RAD6 4932 2.3.2.23 | Details
122 3UIN 1 A SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
123 4A4B 3 C UBIQUITIN-CONJUGATING ENZYME E2 D2 9606 2.3.2.23 | Details
124 4A4C 3 C UBIQUITIN-CONJUGATING ENZYME E2 D2 9606 2.3.2.23 | Details
125 4FH1 1 A Ubiquitin-conjugating enzyme E2 13 4932 2.3.2.23 | Details
126 2GMI 1 A Ubiquitin-conjugating enzyme E2 13 4932 2.3.2.23 | Details
127 2CYX 1 A, B, C Ubiquitin-conjugating enzyme E2 G2 9606 2.3.2.23 | Details
128 3RPG 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
129 3PTF 1 A, B Ubiquitin-conjugating enzyme E2 D1 E2 9606 2.3.2.23 | Details
130 1Z3D 1 A Ubiquitin-conjugating enzyme E2 1 6239 2.3.2.23 | Details
131 1PZV 1 A Probable ubiquitin-conjugating enzyme E2-19 kDa 6239 6.3.2.19 | Details
132 5BNB 1 A, B, C, D Ubiquitin-conjugating enzyme E2 S 9606 2.3.2.23 | Details
133 2O25 2 C, D SUMO-1-conjugating enzyme UBC9 9606 2.3.2 | Details
134 3E95 1 A, B Ubiquitin carrier protein 5833 6.3.2 | Details
135 1A3S 1 A UBC9 9606 2.3.2 | Details
136 3FSH 1 A, B Ubiquitin-conjugating enzyme E2 G2 10090 6.3.2.19 | Details
137 3A4S 1 A, B SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
138 4Y1L 1 A, B SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
139 5JNE 2 B, F SUMO-conjugating enzyme UBC9 unp residues 20-98 4932 2.3.2 | Details
140 6CP0 2 B Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
141 4X57 1 A, C Ubiquitin-conjugating enzyme E2 8 3702 6.3.2.19 | Details
142 5AIE 2 B UBIQUITIN-CONJUGATING ENZYME E2 4 4932 2.3.2.23 | Details
143 2XWU 1 A SUMO-CONJUGATING ENZYME UBC9 9606 2.3.2 | Details
144 1QCQ 1 A PROTEIN (UBIQUITIN CONJUGATING ENZYME) 4932 2.3.2.23 | Details
145 3HCU 2 B, D Ubiquitin-conjugating enzyme E2 N Ubc13 9606 2.3.2.23 | Details
146 2C2V 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
147 4BVU 2 B UBIQUITIN-CONJUGATING ENZYME E2 D3 OXYESTER LINK BETWEEN S85 AND UBIQUITIN G76 9606 2.3.2.23 | Details
148 2UCZ 1 A UBIQUITIN CONJUGATING ENZYME 4932 2.3.2.23 | Details
149 5NKZ 1 A, B Ubiquitin-conjugating enzyme E2-21 kDa 870730 2.3.2.23 | Details
150 1Q34 1 A, B, C Ubiquitin-conjugating enzyme E2-21.5 kDa 6239 2.3.2.23 | Details
151 2OXQ 1 A, B Ubiquitin-conjugating enzyme E2D 1 UbcH5 7955 6.3.2.19 | Details
152 4BWF 1 A UBIQUITIN-CONJUGATING ENZYME E2-21 KDA UBC DOMAIN, RESIDUES 15-183 4932 2.3.2.23 | Details
153 6FGA 2 I, J, K, L, M, N, O Ubiquitin-conjugating enzyme E2 E1 9606 2.3.2.23 | Details
154 2Y9P 1 A UBIQUITIN-CONJUGATING ENZYME E2-21 KDA UBC DOMAIN, RESIDUES 15-183 4932 2.3.2.23 | Details
155 5ZBU 1 B, C Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
156 3W31 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
157 3VON 3 C, E, G, J, L, N, Q, S, U, X, Z, b, e, g, i, l, n, p Ubiquitin-conjugating enzyme E2 N UNP residues 3-150 9606 2.3.2.23 | Details
158 3JVZ 1 A, B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
159 4DHZ 4 F Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
160 1Z5S 1 A Ubiquitin-conjugating enzyme E2 I 9606 2.3.2 | Details
161 5AIT 2 B, E UBIQUITIN-CONJUGATING ENZYME E2 N 9606 2.3.2.23 | Details
162 3L1Z 1 A Ubiquitin-conjugating enzyme E2 D3 9606 2.3.2.23 | Details
163 3JW0 1 A, B Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
164 5VNZ 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
165 5H7S 3 A, C Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
166 5EDV 2 C, D, I Ubiquitin-conjugating enzyme E2 D2 9606 2.3.2.23 | Details
167 3EB6 2 B Ubiquitin-conjugating enzyme E2 D2 8355 6.3.2.19 | Details
168 3OJ4 1 A, D Ubiquitin-conjugating enzyme E2 D1 Ubiquitin-conjugating enzyme E2 D1 9606 2.3.2.23 | Details
169 5VO0 2 B, E Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
170 6Q83 2 B UBC9 4932 2.3.2 | Details
171 4ORH 2 B, F, J Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
172 4WHV 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N unp residues 1-152 9606 2.3.2.23 | Details
173 2LXP 1 A Ubiquitin-conjugating enzyme E2 G2 UNP residues 2-165 9606 2.3.2.23 | Details
174 2Y4W 1 A UBIQUITIN-CONJUGATING ENZYME E2 B 9606 2.3.2.23 | Details
175 2KLY 1 A Ubiquitin-conjugating enzyme E2 G2 9606 2.3.2.23 | Details
176 2PX9 2 B SUMO-conjugating enzyme UBC9 9606 2.3.2 | Details
177 2FUH 1 A Ubiquitin-conjugating enzyme E2 D3 UbcH5c 9606 2.3.2.23 | Details
178 1W4U 1 A UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 9606 2.3.2.23 | Details
179 1UR6 1 A UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2 9606 2.3.2.23 | Details
180 1JAS 1 A UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 9606 2.3.2.23 | Details
181 1FXT 1 A UBIQUITIN-CONJUGATING ENZYME E2-24 KDA 4932 2.3.2.23 | Details