Sequence Similarity Clusters for the Entities in PDB 4TKP

Entity #1 | Chains: A
Ubiquitin-conjugating enzyme E2 N protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 15 1161
95 % 10 26 962 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 10 26 1003
70 % 10 26 1019
50 % 10 26 1069
40 % 54 107 326
30 % 82 181 190
Entity #2 | Chains: B
Tripartite motif-containing protein 5 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64718
95 % 1 1 47199
90 % 1 1 44785
70 % 1 1 39450
50 % 1 1 34143
40 % 1 1 30879
30 % 1 3 11729

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4ONM 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
2 5YWR 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
3 4ONN 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
4 4DHI 2 D Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
5 1J7D 2 B UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 9606 2.3.2.23 | Details
6 3HCT 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
7 4TKP 1 A Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
8 4DHJ 4 C, G, K, N Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
9 4IP3 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
10 3HCU 2 B, D Ubiquitin-conjugating enzyme E2 N Ubc13 9606 2.3.2.23 | Details
11 2C2V 1 B, E, H, K Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
12 3W31 2 B Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
13 3VON 3 C, E, G, J, L, N, Q, S, U, X, Z, b, e, g, i, l, n, p Ubiquitin-conjugating enzyme E2 N UNP residues 3-150 9606 2.3.2.23 | Details
14 4DHZ 4 F Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details
15 4ORH 2 B, F, J Ubiquitin-conjugating enzyme E2 N 9606 2.3.2.23 | Details