Sequence Similarity Clusters for the Entities in PDB 4S1Z

Entity #1 | Chains: A,B,C,D,E
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 263 393 4
95 % 329 490 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 338 504 6
70 % 380 555 9
50 % 384 570 10
40 % 384 574 12
30 % 395 591 20
Entity #2 | Chains: F,G,H,I,J
Ubiquitin thioesterase ZRANB1 protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18176
95 % 1 1 18040 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 8149
70 % 2 2 7927
50 % 2 2 7460
40 % 2 2 7188
30 % 2 2 6746

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures