Sequence Similarity Clusters for the Entities in PDB 4QYZ

Entity #1 | Chains: A
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8681
95 % 3 6 9708 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 3 6 9610
70 % 3 6 9307
50 % 3 6 8344
40 % 3 6 8315
30 % 3 6 7513
Entity #2 | Chains: B,C
CRISPR system Cascade subunit CasB protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3491
95 % 3 6 4239 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 4514
70 % 3 6 4300
50 % 3 6 4379
40 % 3 6 4126
30 % 3 6 4214
Entity #3 | Chains: D,E,F,G,H,I
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 870
95 % 3 6 1206 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 3 6 1232
70 % 3 6 1271
50 % 3 6 1307
40 % 3 6 1353
30 % 3 9 1014
Entity #4 | Chains: J
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9036
95 % 3 6 9965 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 9879
70 % 3 6 9582
50 % 3 6 8922
40 % 3 6 8551
30 % 3 6 7979
Entity #5 | Chains: K
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 7546
95 % 4 7 8270 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 4 7 8211
70 % 4 7 7982
50 % 4 7 7516
40 % 4 7 7257
30 % 8 11 3526
Entity #6 | Chains: L
RNA (55-MER) rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: M
DNA (33-MER) dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4DZD 1 A Uncharacterized protein ygcH 562 3.1 | Details
2 5H9F 8 K CRISPR system Cascade subunit CasE 562 3.1 | Details
3 4U7U 3 D, P CRISPR system Cascade subunit CasE 562 3.1 | Details
4 4QYZ 5 K CRISPR system Cascade subunit CasE 562 3.1 | Details
5 5H9E 8 K CRISPR system Cascade subunit CasE 562 3.1 | Details
6 5CD4 1 A, M CRISPR system Cascade subunit CasE 562 3.1 | Details
7 4TVX 3 A, M CRISPR system Cascade subunit CasE 562 3.1 | Details