Sequence Similarity Clusters for the Entities in PDB 4QYZ

Entity #1 | Chains: A
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8997
95 % 3 6 9927 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 3 6 9852
70 % 3 6 9556
50 % 3 6 8823
40 % 3 6 8517
30 % 3 6 7963
Entity #2 | Chains: B,C
CRISPR system Cascade subunit CasB protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3475
95 % 3 6 4472 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 4526
70 % 3 6 4282
50 % 3 6 4170
40 % 3 6 4280
30 % 3 6 4021
Entity #3 | Chains: D,E,F,G,H,I
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 886
95 % 3 6 1208 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 3 6 1234
70 % 3 6 1269
50 % 3 6 1294
40 % 3 6 1357
30 % 3 9 1015
Entity #4 | Chains: J
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9394
95 % 3 6 9883 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 9799
70 % 3 6 9496
50 % 3 6 8827
40 % 3 6 8467
30 % 3 6 7918
Entity #5 | Chains: K
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 7800
95 % 4 7 8769 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 4 7 8720
70 % 4 7 8505
50 % 4 7 7923
40 % 4 7 7617
30 % 8 11 3582
Entity #6 | Chains: L
RNA (55-MER) rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: M
DNA (33-MER) dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5H9F 3 D, E, F, G, H, I CRISPR system Cascade subunit CasC 562
2 4U7U 4 E, F, G, H, I, J, Q, R, S, T, U, V CRISPR system Cascade subunit CasC 562
3 4QYZ 3 D, E, F, G, H, I CRISPR system Cascade subunit CasC 562
4 5H9E 3 D, E, F, G, H, I CRISPR system Cascade subunit CasC 562
5 5CD4 2 B, C, D, E, F, G, N, O, P, Q, R, S CRISPR system Cascade subunit CasC 562
6 4TVX 2 B, C, D, E, F, G, N, O, P, Q, R, S CRISPR system Cascade subunit CasC 562