Sequence Similarity Clusters for the Entities in PDB 4QYZ

Entity #1 | Chains: A
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9268
95 % 3 6 9261 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 3 6 9167
70 % 3 6 9274
50 % 3 6 8294
40 % 3 6 8481
30 % 3 6 7737
Entity #2 | Chains: B,C
CRISPR system Cascade subunit CasB protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3470
95 % 3 6 4438 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 4280
70 % 3 6 4267
50 % 3 6 4345
40 % 3 6 4278
30 % 3 6 4012
Entity #3 | Chains: D,E,F,G,H,I
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 884
95 % 3 6 1208 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 3 6 1239
70 % 3 6 1269
50 % 3 6 1295
40 % 3 6 1349
30 % 3 9 1011
Entity #4 | Chains: J
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8998
95 % 3 6 9310 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 9831
70 % 3 6 9541
50 % 3 6 8882
40 % 3 6 8513
30 % 3 6 7941
Entity #5 | Chains: K
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 8234
95 % 4 7 9036 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 4 7 8961
70 % 4 7 8738
50 % 4 7 8124
40 % 4 7 7827
30 % 8 11 3608
Entity #6 | Chains: L
RNA (55-MER) rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: M
DNA (33-MER) dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5H9F 2 B, C CRISPR system Cascade subunit CasB 562
2 4U7U 2 B, C, N, O CRISPR system Cascade subunit CasB 562
3 4QYZ 2 B, C CRISPR system Cascade subunit CasB 562
4 5H9E 2 B, C CRISPR system Cascade subunit CasB 562
5 5CD4 5 J, K, V, W CRISPR system Cascade subunit CasB 562
6 4TVX 1 J, K, V, W CRISPR system Cascade subunit CasB 562