Sequence Similarity Clusters for the Entities in PDB 4QYZ

Entity #1 | Chains: A
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9366
95 % 3 6 9853 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 3 6 9766
70 % 3 6 9459
50 % 3 6 8811
40 % 3 6 8447
30 % 3 6 7893
Entity #2 | Chains: B,C
CRISPR system Cascade subunit CasB protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3541
95 % 3 6 4385 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 4479
70 % 3 6 4434
50 % 3 6 4320
40 % 3 6 4230
30 % 3 6 4131
Entity #3 | Chains: D,E,F,G,H,I
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 876
95 % 3 6 1207 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 3 6 1237
70 % 3 6 1274
50 % 3 6 1304
40 % 3 6 1355
30 % 3 9 1017
Entity #4 | Chains: J
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9365
95 % 3 6 9852 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 9765
70 % 3 6 9458
50 % 3 6 8810
40 % 3 6 8446
30 % 3 6 7892
Entity #5 | Chains: K
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 7482
95 % 4 7 8207 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 4 7 8151
70 % 4 7 7946
50 % 4 7 7477
40 % 4 7 7228
30 % 8 11 3486
Entity #6 | Chains: L
RNA (55-MER) rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: M
DNA (33-MER) dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5H9F 1 A CRISPR system Cascade subunit CasA 562
2 4U7U 1 A, M CRISPR system Cascade subunit CasA 562
3 4QYZ 1 A CRISPR system Cascade subunit CasA 562
4 5H9E 1 A CRISPR system Cascade subunit CasA 562
5 5CD4 4 I, U CRISPR system Cascade subunit CasA 562
6 4TVX 6 I, U CRISPR system Cascade subunit CasA 562