Sequence Similarity Clusters for the Entities in PDB 4QYZ

Entity #1 | Chains: A
CRISPR system Cascade subunit CasA protein, length: 502 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9021
95 % 3 6 9188 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 3.0
PDBFlex
90 % 3 6 9120
70 % 3 6 8868
50 % 3 6 8268
40 % 3 6 7943
30 % 3 6 7410
Entity #2 | Chains: B,C
CRISPR system Cascade subunit CasB protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3631
95 % 3 6 4451 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 3 6 4255
70 % 3 6 4235
50 % 3 6 4382
40 % 3 6 4083
30 % 3 6 4151
Entity #3 | Chains: D,E,F,G,H,I
CRISPR system Cascade subunit CasC protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 880
95 % 3 6 1201 Flexibility: Medium
Max RMSD: 12.1, Avg RMSD: 4.0
PDBFlex
90 % 3 6 1227
70 % 3 6 1269
50 % 3 6 1292
40 % 3 6 1345
30 % 3 9 1011
Entity #4 | Chains: J
CRISPR system Cascade subunit CasD protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8616
95 % 3 6 9189 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 6 9121
70 % 3 6 8869
50 % 3 6 8269
40 % 3 6 7944
30 % 3 6 7865
Entity #5 | Chains: K
CRISPR system Cascade subunit CasE protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 7501
95 % 4 7 8800 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 4 7 8737
70 % 4 7 8442
50 % 4 7 7903
40 % 4 7 7612
30 % 8 11 3565
Entity #6 | Chains: L
RNA (55-MER) rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: M
DNA (33-MER) dna, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures