Sequence Similarity Clusters for the Entities in PDB 4QVV

Entity #1 | Chains: A,O
Proteasome subunit alpha type-2 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 309 9
95 % 209 309 20 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 209 309 23
70 % 209 309 33
50 % 209 309 70
40 % 220 366 42
30 % 1331 2273 2
Entity #10 | Chains: J,X
Proteasome subunit beta type-4 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 305 18
95 % 209 305 30 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 209 305 32
70 % 209 305 41
50 % 209 305 75
40 % 220 360 49
30 % 220 362 50
Entity #11 | Chains: K,Y
Proteasome subunit beta type-5 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12688
95 % 173 247 61 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 173 247 68
70 % 216 312 28
50 % 216 316 63
40 % 216 316 81
30 % 219 339 30
Entity #12 | Chains: L,Z
Proteasome subunit beta type-6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 178 273 21
95 % 209 306 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 209 306 30
70 % 209 306 40
50 % 209 306 74
40 % 209 328 79
30 % 209 328 86
Entity #13 | Chains: M,a
Proteasome subunit beta type-7 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 306 16
95 % 209 306 28 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 209 306 31
70 % 209 306 39
50 % 209 306 73
40 % 209 306 90
30 % 209 306 91
Entity #14 | Chains: N,b
Proteasome subunit beta type-1 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 306 15
95 % 209 306 26 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 209 306 28
70 % 209 306 37
50 % 209 306 72
40 % 209 310 87
30 % 209 310 89
Entity #2 | Chains: B,P
Proteasome subunit alpha type-3 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 309 11
95 % 209 309 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 209 309 24
70 % 209 309 34
50 % 220 364 36
40 % 220 366 43
30 % 1332 2273 2
Entity #3 | Chains: C,Q
Proteasome subunit alpha type-4 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 309 10
95 % 209 309 22 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 209 309 25
70 % 209 309 35
50 % 220 363 38
40 % 223 393 18
30 % 1333 2273 2
Entity #4 | Chains: D,R
Proteasome subunit alpha type-5 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 207 308 13
95 % 208 309 24 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 209 310 21
70 % 209 310 31
50 % 220 365 35
40 % 220 365 45
30 % 1334 2273 2
Entity #5 | Chains: E,S
Proteasome subunit alpha type-6 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 207 307 17
95 % 209 309 19 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 209 309 22
70 % 209 309 32
50 % 209 309 69
40 % 209 309 88
30 % 1335 2273 2
Entity #6 | Chains: F,T
Probable proteasome subunit alpha type-7 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 196 264 25
95 % 196 264 44 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 196 264 49
70 % 196 264 59
50 % 196 264 93
40 % 196 264 107
30 % 196 264 111
Entity #7 | Chains: G,U
Proteasome subunit alpha type-1 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 309 12
95 % 209 309 23 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 209 309 26
70 % 209 309 36
50 % 220 361 41
40 % 220 367 44
30 % 1336 2273 2
Entity #8 | Chains: H,V
Proteasome subunit beta type-2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 240 42
95 % 196 285 37 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 203 296 38
70 % 203 296 46
50 % 220 339 53
40 % 220 339 69
30 % 220 339 72
Entity #9 | Chains: I,W
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 306 14
95 % 209 306 27 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 209 306 29
70 % 209 306 38
50 % 220 357 42
40 % 220 363 46
30 % 220 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures